Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anolis carolinensis

ABSTRACT: Anolis carolinensis B-chromosome sequencing

PROVIDER: PRJNA315497 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3233774_1.fastq.gz	Fastqsanger.gz
	SRR3233774_2.fastq.gz	Fastqsanger.gz
	SRR7497942_1.fastq.gz	Fastqsanger.gz
	SRR7497942_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

The transcriptome of embryos of the green anole, Anolis carolinensis, at 28 and 38 somite pair stages

Project description:Anolis carolinensis embryos were collected 0-1 days post egg laying, and total RNA was extracted for RNA-Seq analysis (Illumina Hi-Seq2000). Transcriptome sequence from these stages in the green anole, equivalent to mouse 9.5-10.5 dpc embryos, will help to improve gene annotations in A. carolinensis and provide expression level information for key organogenesis and patterning processes. Anolis carolinensis embryos were collected 0-1 days post egg laying for RNA-Seq analysis. The two embryos collected were at 28 somite-pair (28S) and 38 somite-pair (38S), equivalent to mouse 9.5 dpc and 10.5 dpc embryos, respectively. Total RNA was extracted using the total RNA component of the mirVana (Ambion) kit, RNA-Seq library prep was carried out using the NuGEN Ovation RNA-Seq kit, and sequencing was carried out on an Illumina HiSeq 2000, following the manufacturer's protocol. The untrimmed data was then aligned to the Anolis carolinensis reference genome (Anocar2.0) using tophat. Published: Eckalbar WL, Lasku E, Infante CR, Elsey RM, Markov GJ, Allen AN, Corneveaux JJ, Losos JB, DeNardo DF, Huentelman MJ, Wilson-Rawls J, Rawls A, Kusumi K. Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock. Dev Biol. DOI: 10.1016/j.ydbio.2011.11.021

2011-12-14 | E-GEOD-34415 | biostudies-arrayexpress

Anolis carolinensis

Project description:Anolis carolinensis RAD-seq

| PRJNA236043 | ENA

Anolis carolinensis

Project description:Anolis carolinensis Raw sequence reads

| PRJNA1268161 | ENA

Anolis carolinensis

Project description:Genome resequence of Anolis carolinensis

| PRJDB4528 | ENA

Anolis carolinensis

Project description:Anolis carolinensis Raw sequence reads