Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Glyptosternon maculatum

ABSTRACT: Glyptosternon maculatum overview

PROVIDER: PRJNA316349 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1994393_1.fastq.gz	Fastqsanger.gz
	SRR1994393_2.fastq.gz	Fastqsanger.gz
	SRR7268130_subreads.fastq.gz	Fastqsanger.gz
	SRR7268140_subreads.fastq.gz	Fastqsanger.gz
	SRR7268150_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 117

Similar Datasets

Glyptosternon maculatum

Project description:Glyptosternon maculatum Genome sequencing and assembly

| PRJNA501563 | ENA

Glyptosternon maculatum

Project description:Glyptosternon maculatum Genome sequencing and assembly

| PRJNA447978 | ENA

Glyptosternon maculatum

Project description:Glyptosternon maculatum Genome sequencing and assembly

| PRJNA556759 | ENA

Glyptosternon maculatum

Project description:Glyptosternon maculatum Genome sequencing and assembly

| PRJNA501784 | ENA

Glyptosternon maculatum

Project description:Glyptosternon maculatum liver tissue raw sequence reads

| PRJNA281670 | ENA

Ethmidium maculatum

Project description:Ethmidium maculatum overview

| PRJNA81535 | ENA

Amblyomma maculatum

Project description:Amblyomma maculatum overview

| PRJNA83841 | ENA

Notoglanidium maculatum

Project description:Notoglanidium maculatum

| PRJNA863863 | ENA

Geranium maculatum

Project description:Geranium maculatum

| PRJNA807627 | ENA

Draft genome of Glyptosternon maculatum, an endemic fish from Tibet Plateau.

Project description:Mechanisms for high-altitude adaption have attracted widespread interest among evolutionary biologists. Several genome-wide studies have been carried out for endemic vertebrates in Tibet, including mammals, birds, and amphibians. However, little information is available about the adaptive evolution of highland fishes. Glyptosternon maculatum (Regan 1905), also known as Regan or barkley and endemic to the Tibetan Plateau, belongs to the Sisoridae family, order Siluriformes (catfishes). This species lives at an elevation ranging from roughly 2,800 m to 4,200 m. Hence, a high-quality reference genome of G. maculatum provides an opportunity to investigate high-altitude adaption mechanisms of fishes. To obtain a high-quality reference genome sequence of G. maculatum, we combined Pacific Bioscience single-molecule real-time sequencing, Illumina paired-end sequencing, 10X Genomics linked-reads, and BioNano optical map techniques. In total, 603.99 Gb sequencing data were generated. The assembled genome was about 662.34 Mb with scaffold and contig N50 sizes of 20.90 Mb and 993.67 kb, respectively, which captured 83% complete and 3.9% partial vertebrate Benchmarking Universal Single-Copy Orthologs. Repetitive elements account for 35.88% of the genome, and 22,066 protein-coding genes were predicted from the genome, of which 91.7% have been functionally annotated. We present the first comprehensive de novo genome of G. maculatum. This genetic resource is fundamental for investigating the origin of G. maculatum and will improve our understanding of high-altitude adaption of fishes. The assembled genome can also be used as reference for future population genetic studies of G. maculatum.

| S-EPMC6136493 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data