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Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation

ABSTRACT: Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation

PROVIDER: PRJNA318456 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR3382830.fastq.gz	Fastqsanger.gz
	SRR3382850.fastq.gz	Fastqsanger.gz
	SRR3382860.fastq.gz	Fastqsanger.gz
	SRR3382890_1.fastq.gz	Fastqsanger.gz
	SRR3382890_2.fastq.gz	Fastqsanger.gz

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Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation

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Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [ChIP-seq]

Project description:We report that in developing B cells individual enhancers of Igk make up super-enhancer cluster where contacts between its components rely on all constituents. Reduction of interaction frequency in enhancer knock-out cells is associated with deminished transcriptional output of enhancers and Igk locus. Moreover, we find that Igk enhancer MiEk has an effect on levels of CBFb enrichment on Tcrb enhancer, Eb afffecting Tcrb recombination and T cell development.

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Mus musculus

Project description:Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [ChIP-seq]

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Mus musculus

Project description:Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [RNA-seq]

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Project description:Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [4C-seq]

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Project description:Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [ATAC-seq]

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Active and Inactive Enhancers Cooperate to Exert Localized and Long-Range Control of Gene Regulation.

Project description:V(D)J recombination relies on the presence of proximal enhancers that activate the antigen receptor (AgR) loci in a lineage- and stage-specific manner. Unexpectedly, we find that both active and inactive AgR enhancers cooperate to disseminate their effects in a localized and long-range manner. Here, we demonstrate the importance of short-range contacts between active enhancers that constitute an Igk super-enhancer in B cells. Deletion of one element reduces the interaction frequency between other enhancers in the hub, which compromises the transcriptional output of each component. Furthermore, we establish that, in T cells, long-range contact and cooperation between the inactive Igk enhancer MiEκ and the active Tcrb enhancer Eβ alters enrichment of CBFβ binding in a manner that impacts Tcrb recombination. These findings underline the complexities of enhancer regulation and point to a role for localized and long-range enhancer-sharing between active and inactive elements in lineage- and stage-specific control.

| S-EPMC4899175 | biostudies-literature

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