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Analyses of RNAi-heterochromatin positive feedback loop in Tetrahymena

ABSTRACT: Analyses of RNAi-heterochromatin positive feedback loop in Tetrahymena

PROVIDER: PRJNA343227 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR4252180.fastq.gz	Fastqsanger.gz
	SRR4252190.fastq.gz	Fastqsanger.gz
	SRR4252200.fastq.gz	Fastqsanger.gz
	SRR4252181.fastq.gz	Fastqsanger.gz
	SRR4252191.fastq.gz	Fastqsanger.gz

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Analyses of heterochromatin distributions in the mutatnts defective in an RNAi-heterochromatin positive feedback loop in Tetrahymena [ChIP]

Project description:In the ciliated protozoan Tetrahymena, an RNAi-mediated feedback loop is important for assembling heterochromatin on the sequences that are removed from the somatic genome by programmed DNA elimination. Because heterochromatin is formed exclusively on the eliminated sequences, some mechanism must inhibit this feedback loop at the boundaries of the eliminated sequences. In this study, we show that the HP1-like protein Coi6p, its interaction partners Coi7p and Lia5p, and the histone demethylase Jmj1p are crucial for confining the formation of heterochromatin to the eliminated sequences.

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Analyses of RNAi-heterochromatin positive feedback loop in Tetrahymena

Project description:This SuperSeries is composed of the SubSeries listed below.

2017-03-06 | GSE87015 | GEO

Negative Regulators of an RNAi-Heterochromatin Positive Feedback Loop Safeguard Somatic Genome Integrity in Tetrahymena.

Project description:RNAi-mediated positive feedback loops are pivotal for the maintenance of heterochromatin, but how they are downregulated at heterochromatin-euchromatin borders is not well understood. In the ciliated protozoan Tetrahymena, heterochromatin is formed exclusively on the sequences that are removed from the somatic genome by programmed DNA elimination, and an RNAi-mediated feedback loop is important for assembling heterochromatin on the eliminated sequences. In this study, we show that the heterochromatin protein 1 (HP1)-like protein Coi6p, its interaction partners Coi7p and Lia5p, and the histone demethylase Jmj1p are crucial for confining the production of small RNAs and the formation of heterochromatin to the eliminated sequences. The loss of Coi6p, Coi7p, or Jmj1p causes ectopic DNA elimination. The results provide direct evidence for the existence of a dedicated mechanism that counteracts a positive feedback loop between RNAi and heterochromatin at heterochromatin-euchromatin borders to maintain the integrity of the somatic genome.

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