Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Indian Ocean 2015

PROVIDER: PRJNA345164 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4341430_1.fastq.gz	Fastqsanger.gz
	SRR4341430_2.fastq.gz	Fastqsanger.gz
	SRR4341440_1.fastq.gz	Fastqsanger.gz
	SRR4341440_2.fastq.gz	Fastqsanger.gz
	SRR4341450_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

marine metagenome

Project description:Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) North Pacific Line-67 2009

| PRJNA345162 | ENA

marine metagenome

Project description:Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Caribbean Sea near Curacao (including saline pond samples in Curacao) 2015

| PRJNA345177 | ENA

Project description:Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 2 (R2) North Pacific Line-67

| PRJNA489478 | ENA

Metaproteomics analysis of microbial structure on the surface of Indian Ocean

Project description:In this study we characterize microbial community features on the surface of Indian Ocean. 11 samples were collected from Indian Ocean and subjected for quantitative metaproteomics analysis for taxonomic and functional analysis. Our results suggested that metabolic tuning at metaproteomics levels enabled microbial community to sustain stable when subjected to environmental perturbations in the oligotrophic ocean.

2023-05-10 | PXD016285 | Pride

Pacific Ocean metaproteomics, METZYME KM1128

Project description:Global metaproteomic analyses of microbial biomass from the upper water column of the Central Pacific Ocean. This dataset was used as a discovery dataset to identify peptide biomarkers for cyanobacterial populations for use in targeted metaproteomic calibrated multiple reaction monitoring (MRM) analyses published in in Saito et al., 2014 and 2015. Saito, M. A., McIlvin, M. R., Moran, D. M., Goepfert, T. J., DiTullio, G. R., Post, A. F., and Lamborg, C. H.: Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers, Science, 345, 1173-1177, 2014. Saito, M. A., Dorsk, A., Post, A. F., McIlvin, M., Rappé, M. S., DiTullio, G., and Moran, D.: Needles in the Blue Sea: Sub‐Species Specificity in Targeted Protein Biomarker Analyses Within the Vast Oceanic Microbial Metaproteome, PROTEOMICS, 15, 3521-3531, 2015.

2019-02-12 | PXD009712 | Pride

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1240 metatranscriptome

| PRJNA410078 | ENA

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP0895 metatranscriptome

| PRJNA410077 | ENA

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP957 metatranscriptome

| PRJNA410094 | ENA

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1089 metatranscriptome