Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudocercospora ulei strain:Mu15MG

ABSTRACT: Pseudocercospora ulei ERN8 Genome sequencing

PROVIDER: PRJNA347040 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10031354_subreads.fastq.gz	Fastqsanger.gz
	SRR10031355_subreads.fastq.gz	Fastqsanger.gz
	SRR10031356_subreads.fastq.gz	Fastqsanger.gz
	SRR10031357_subreads.fastq.gz	Fastqsanger.gz
	SRR10031358_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Pseudocercospora ulei

Project description:Pseudocercospora ulei overview

| PRJNA573265 | ENA

Pseudocercospora ulei strain:ERN8

Project description:Pseudocercospora ulei ERN8 Transcriptome - Pulei_UFV_RNA

| PRJNA572458 | ENA

Pseudocercospora ulei strain:GCL012

Project description:Pseudocercospora ulei strain:GCL012 Genome sequencing and assembly

| PRJNA661960 | ENA

Erythroxylum ulei

Project description:Erythroxylum ulei

| PRJNA713611 | ENA

Pseudocercospora crystallina

Project description:Pseudocercospora crystallina Genome sequencing and assembly

| PRJNA482514 | ENA

Pseudocercospora eumusae strain:CBS 114824

Project description:Pseudocercospora eumusae genome sequencing and assembly

| PRJNA289096 | ENA

Pseudocercospora fuligena strain:CBS 109729

Project description:Pseudocercospora fuligena strain:CBS 109729 Genome sequencing and assembly

| PRJNA627565 | ENA

Pseudocercospora musae strain:CBS 116634

Project description:Pseudocercospora musae strain:CBS 116634 Genome sequencing and assembly

| PRJNA289098 | ENA

Pseudocercospora macadamiae strain:BRIP 55526

Project description:Pseudocercospora macadamiae strain:BRIP 55526 Genome sequencing and assembly

| PRJNA594214 | ENA

High-quality genome assembly of Pseudocercospora ulei the main threat to natural rubber trees.

Project description:Pseudocercospora ulei is the causal agent of South American Leaf Blight (SALB), the main disease affecting Hevea brasiliensis rubber tree, a native species to the Amazon. Rubber tree is a major crop in South American countries and SALB disease control strategies would benefit from the availability of genomic resources for the fungal pathogen. Here, we assembled and annotated the P. ulei genome. Shotgun sequencing was performed using second and third generation sequencing technologies. We present the first P. ulei high-quality genome assembly, the largest among Mycosphaerellaceae, with 93.8 Mbp, comprising 215 scaffolds, an N50 of 2.8 Mbp and a BUSCO gene completeness of 97.5%. We identified 12,745 protein-coding gene models in the P. ulei genome with 756 genes encoding secreted proteins and 113 genes encoding effector candidates. Most of the genome (80%) is composed of repetitive elements dominated by retrotransposons of the Gypsy superfamily. P. ulei has the largest genome size among Mycosphaerellaceae, with the highest TE content. In conclusion, we have established essential genomic resources for a wide range of studies on P. ulei and related species.

| S-EPMC8762716 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data