Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Candidatus Velamenicoccus archaeovorus strain:LiM

ABSTRACT: Candidatus Velamenicoccus archaeovorus strain:LiM Genome sequencing and assembly

PROVIDER: PRJNA358653 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Bacillus sp. TYF-LIM-B05 strain:TYF-LIM-R05

Project description:Bacillus sp. TYF-LIM-B05 strain:TYF-LIM-R05 Genome sequencing and assembly

| PRJNA488334 | ENA

Methanosaeta and Candidatus Velamenicoccus archaeovorus

Project description:The Candidatus phylum Omnitrophica (candidate division OP3) occurs ubiquitous in anaerobic habitats, but is currently characterized only by draft genomes from metagenomes and single cells. We had visualized cells of the phylotype OP3 LiM in methanogenic cultures on limonene as small epibiontic cells. In this study, we enriched OP3 cells by double density centrifugation and obtained the first closed genome of an apparently clonal OP3 cell population applying metagenomics and PCR for gap closure. Filaments of acetoclastic Methanosaeta, the largest morphotype in limonene enrichment cultures, contained empty cells, dead cells and cells devoid of rRNA or both rRNA and DNA according to TEM, thin-section TEM, SEM, CARD-FISH and Live/Dead images. OP3 LiM cells were ultramicrobacteria (200-300 nm in diameter) and showed two physiological stages in CARD-FISH fluorescence signals: strong signals indicated many rRNA molecules and an active metabolism of OP3 LiM cells attached to Bacteria and to Archaea, whereas free-living OP3 cells had weak signals. Metaproteomics revealed that OP3 LiM lives with highly expressed secreted proteins involved in depolymerization and uptake of macromolecules, an active glycolysis and energy conservation by the utilization of pyruvate via a pyruvate:ferredoxin oxidoreductase and an RNF complex (Ferredoxin:NAD oxidoreductase). Besides sugar fermentation, a nucleotidyl transferase may contribute to energy conservation by phosphorolysis, the phosphate-dependent depolymerization of nucleic acids. Thin section TEM showed distinctive structures of predation that had been previously observed for “Velamenicoccus”. Our study demonstrated a predatory metabolism for OP3 LiM cells and we propose as name for OP3 LiM Candidatus Velamenicoccus archaeovorus gen. nov., sp. nov..

2022-03-14 | PXD025008 | Pride

Proteome of "Candidatus Kuenenia Stuttgartiensis" strain CSTR1 growing planctonically in semi-CSTR reactor

Project description:The dataset provides the whole proteome of the anammox bacterium "Candidatus Kuenenia Stuttgartiensis" strain CSTR1 growing planctonically in semi-CSTR reactor. The bacteria were growing at high growth rate (0.33 d-1) (reactor HRT 3d).

2020-11-11 | PXD018553 | Pride

Potato psyllids mount distinct gut responses upon infection with each of the two ‘Candidatus Liberibacter solanacearum’ haplotypes

Project description:The global transcriptional responses of the adult potato psyllid gut upon infection of the two Candidatus Liberibacter solanacearum (Lso) haplotypes using Illumina sequencing

2022-06-27 | GSE206877 | GEO

Candidatus Pandoraea novymonadis strain:E262

Project description:Candidatus Pandoraea novymonadis strain:E262 Genome sequencing and assembly

| PRJNA369045 | ENA

Candidatus Burkholderia brachyanthoides strain:UZHbot7

Project description:Candidatus Burkholderia brachyanthoides strain:UZHbot7 Genome sequencing and assembly

| PRJNA253362 | ENA

Candidatus Phytoplasma phoenicium strain:Tabriz1

Project description:Candidatus Phytoplasma phoenicium strain:Tabriz1 Genome sequencing and assembly

| PRJNA1236668 | ENA

Candidatus Acidianus copahuensis strain:ALE1

Project description:Candidatus Acidianus copahuensis strain:ALE1 Genome sequencing and assembly

| PRJNA240874 | ENA

Candidatus Dactylopiibacterium carminicum strain:NFE1

Project description:Candidatus Dactylopiibacterium carminicum strain:NFE1 Genome sequencing and assembly

| PRJNA355137 | ENA

Candidatus Nitrosotenuis cloacae strain:LSM1

Project description:Candidatus Nitrosotenuis cloacae strain:LSM1 Genome sequencing and assembly

| PRJNA903657 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data