Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lichen metagenome

ABSTRACT: Lichen associated microbial communities from Scotland - Lobaria pulmonaria GB1-07_RNA metatranscriptome

PROVIDER: PRJNA364453 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5210833_1.fastq.gz	Fastqsanger.gz
	SRR5210833_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Transcriptome profiling of lichen myco- and photobionts of Lobaria pulmobaria during ultraviolet-B exposure

Project description:We used raw RNA-Seq data from the lichen Lobaria pulmonaria to analyze changes in gene expression in response to ultraviolet-B (UV-B) treatment. The aim of the present work was to unravel the UV-B-induced defense response in the lichen Lobaria pulmonaria based on physiological traits and transcriptional profiling. Here we analyzed gene expression in mycobionts (Lobaria pulmonaria) and photobionts (Symbiochloris reticulata) after 80 min daily application of UV-B treatment of Lobaria pulmonaria thalli for two weeks. Special attention was paid to the UV-B-induced expression of the genes encoding stress tolerance proteins (heat shock proteins, antioxidants, etc.) and enzymes involved in the biosynthesis of photoprotective metabolites.

2024-09-03 | GSE228186 | GEO

lichen metagenome

Project description:Lichen associated microbial communities from an English oak tree in Kingussie, Scotland - Lobaria pulmonaria Scotland Metagenome metagenome

| PRJNA367448 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T1DN+c metatranscriptome

| PRJNA367594 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T1WN-a metatranscriptome

| PRJNA367595 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T2DN-b metatranscriptome

| PRJNA367602 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T2DN-c metatranscriptome

| PRJNA367603 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T2DN+a metatranscriptome

| PRJNA367604 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T2WN-a metatranscriptome

| PRJNA367607 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T2WN-b metatranscriptome

| PRJNA367608 | ENA

lichen metagenome

Project description:Lichen associated microbial communities from Aargau, Switzerland - Lobaria pulmonaria Metatranscriptome - T1DN+a metatranscriptome

| PRJNA367592 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data