Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Marine microbial communities from the Deep Indian Ocean - MP1372 metatranscriptome

PROVIDER: PRJNA366421 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6216969_1.fastq.gz	Fastqsanger.gz
	SRR6216969_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

marine metagenome

Project description:Marine microbial communities from the Deep Indian Ocean - MP0958 metatranscriptome

| PRJNA366417 | ENA

marine metagenome

Project description:Marine microbial communities from the Deep Indian Ocean - MP1090 metatranscriptome

| PRJNA366418 | ENA

marine metagenome

Project description:Marine microbial communities from the Deep Indian Ocean - MP1139 metatranscriptome

| PRJNA366419 | ENA

marine metagenome

Project description:Marine microbial communities from the Deep Indian Ocean - MP1200 metatranscriptome

| PRJNA366420 | ENA

Effects of nutrient enrichment on surface microbial community gene expression in the oligotrophic North Pacific Subtropical Gyre

Project description:Marine microbial communities are critical for biogeochemical cycles and the productivity of ocean ecosystems. Primary productivity, at the base of marine food webs, is constrained by nutrient availability in the surface ocean, and nutrient advection from deeper waters can fuel photosynthesis. In this study, we compared the transcriptional responses by surface microbial communities after experimental deep water mixing to the transcriptional patterns of in situ microbial communities collected with high-resolution automated sampling during a bloom in the North Pacific Subtropical Gyre. Transcriptional responses were assayed with the MicroTOOLs (Microbiological Targets for Ocean Observing Laboratories) marine environmental microarray, which targets all three domains of life and viruses. The experiments showed that mixing of deep and surface waters substantially affects the transcription of photosystem and nutrient response genes among photosynthetic taxa within 24 hours, and that there are specific responses associated with the addition of deep water containing particles (organisms and detritus) compared to filtered deep water. In situ gene transcription was most similar to that in surface water experiments with deep water additions, showing that in situ populations were affected by mixing of nutrients at the six sampling sites. Together, these results show the value of targeted metatranscriptomes for assessing the physiological status of complex microbial communities.

2018-09-03 | GSE109218 | GEO

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP0895 metatranscriptome

| PRJNA410077 | ENA

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1138 metatranscriptome

| PRJNA410096 | ENA

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1371 metatranscriptome

| PRJNA410098 | ENA

marine metagenome

Project description:Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1089 metatranscriptome