Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Calypte anna, Taeniopygia guttata

ABSTRACT: Diploid genome assembly using PacBio data of avian models for vocal learning

PROVIDER: PRJNA368994 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR5224500_subreads.fastq.gz	Fastqsanger.gz
	SRR5224501_subreads.fastq.gz	Fastqsanger.gz
	SRR5224502_subreads.fastq.gz	Fastqsanger.gz
	SRR5224503_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 111

Similar Datasets

Weighted gene co-expression network analysis on microarray data from subregions of zebra finch (Taeniopygia guttata) basal ganglia

Project description:Similarities between speech and birdsong make songbirds advantageous for investigating the neurogenetics of learned vocal communication; a complex phenotype likely supported by ensembles of interacting genes in cortico-basal ganglia pathways of both species. To date, only FoxP2 has been identified as critical to both speech and birdsong. We performed weighted gene co-expression network analysis on microarray data from singing zebra finches to discover gene ensembles regulated during vocal behavior. We found ~2,000 singing- regulated genes comprising 3 co-expression groups unique to area X, the basal ganglia subregion dedicated to learned vocal-motor behavior. These contained known targets of human FOXP2 and potential avian targets. We validated novel biological pathways for vocalization. Our findings show that higher-order gene co-expression patterns, rather than expression levels, molecularly distinguish area X from the ventral striato-pallidum during singing. The previously unknown structure of singing-driven networks enables prioritization of molecular interactors that likely bear on human motor disorders, especially those affecting speech.

2012-01-04 | GSE34819 | GEO

Weighted gene co-expression network analysis on microarray data from subregions of zebra finch (Taeniopygia guttata) basal ganglia

2012-01-04 | E-GEOD-34819 | biostudies-arrayexpress

Taeniopygia guttata

Project description:Discrete molecular states in the brain accompany changing responses to a vocal signal.

| PRJNA153099 | ENA

Taeniopygia guttata

Project description:Epigenetic signature of extended critical period learning

| PRJNA356945 | ENA

Interspecific single-cell transcriptomic analysis reveals differences in signaling pathways governing gonadal primordial germ cells between chicken and zebra finch (Taeniopygia guttata) [chicken scRNA-seq]

Project description:Primordial germ cells (PGCs), major cell resource used in the production of germline chimeras in birds, have been used in conservation of avian genetic resources and production of transgenic animals. Numerous bird species have been put on the brink of extinction due to habitat loss and degradation caused by environmental destruction and climate change, but research on PGCs is limited to specific poultry, such as chickens. Although it has recently been expanding to various bird species, it is still difficult to utilize PGCs due to biological differences and difficulties in in vitro long-term culture. Here, we constructed a single-cell landscape of chicken gonadal PGCs with established long-term culture systems of PGCs and compared them with those of the vocal learning wild bird, the zebra finches. Our results identified the interspecific differences in signaling pathways in gonadal PGCs and somatic cells, respectively. In particular, the NODAL and insulin signaling pathways were more active in zebra finch than in chickens, whereas the FGF downstream signaling pathway known to be important for the proliferation of chicken PGCs, was more active in chickens. These differences may contribute to optimizing the in vitro culture conditions of zebra finch PGCs. This study is the first cross-species single-cell transcriptomic analysis targeting birds, and laid an essential groundwork to contribute to the restoration of endangered birds and the production of transgenic birds by securing sufficient PGCs from various bird species in the future.

2023-11-28 | GSE208178 | GEO

Calypte anna

Project description:Calypte anna genome sequencing and assembly

| PRJNA677934 | ENA

Calypte anna

Project description:Calypte anna overview

| PRJNA255006 | ENA

Calypte anna

Project description:Calypte anna Genome sequencing and assembly

| PRJNA212866 | ENA

Calypte anna

Project description:Calypte anna (Anna's hummingbird) genome sequencing and assembly, primary haplotype, v1