Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Leishmania RNA Virus Genomics' study from French Guiana

PROVIDER: PRJNA371487 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5233130_1.fastq.gz	Fastqsanger.gz
	SRR5233130_2.fastq.gz	Fastqsanger.gz
	SRR5233140_1.fastq.gz	Fastqsanger.gz
	SRR5233140_2.fastq.gz	Fastqsanger.gz
	SRR5233131_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

RNA-seq on four Aedes aegypti lines differing in resistance to deltamethrin

Project description:General information_new_RNA The whole transcriptome of four Aedes aegypti lines has been studied: - IR13, an isofemale line from Ile Royale, French Guiana, showing a weak resistance to deltamethrin - IR03, another isofemale line from Ile Royale, French Guiana, showing a strong resistance to deltamethrin, -IR0Free, a derivative of IR03 free from the kdr1034 mutation, still showing a strong resistance to deltamethrin, - Bora-Bora, a laboratory strain sensitive to deltamethrin. Illumina RNAseq data was obtained from 4 pools of 25 individuals for each line

2024-01-01 | E-MTAB-13325 | biostudies-arrayexpress

DNA-seq of two Aedes aegypti lines differing in resistance to deltamethrin

Project description:The genome of two isogenic lines from Aedes aegypti from Ile Royale, French Guiana, with a marked difference in resistance to deltamethrin was investigated in order to understand the genetic basis of this phenotypic difference. Genomic sequencing was performed both with Illumina short, paired reads and with Minion long reads.

2024-01-01 | E-MTAB-13310 | biostudies-arrayexpress

Project description:French Guiana forest soil metagenomic sequencing study

| PRJEB1725 | ENA

MicroRNAome comparison between macrophages infected with Leishmania RNA virus containing L.guyanensis and virus-free parasites

Project description:Leishmania RNA virus is an endosymbiotic virus of obligate intracellular Leishmania parasites. The presence of Leishmania RNA virus has been associated to metastatic leishmaniasis in hamsters and the failure of the first-line treatment in humans. This experiment aims to find the differences in the microRNA profile of bone-marrow derived macrophages infected with Leishmania RNA virus containing L.guyanensis or virus-free parasites.

2016-09-01 | E-MTAB-4413 | biostudies-arrayexpress

Deltamethrin resistance mechanisms in Aedes aegypti populations from three French overseas territories worldwide.

Project description:Custom microarrays were used to examine differential gene expression between pyrethroid resistant vs pyrethroid susceptible phenotypes of the dengue vector mosquito Aedes aegypti. Pyrethroid resistant population were from Cayenne (French Guiana, GUY), Baie Mahault (Guadeloupe, GUA) and Noumea (New Caledonia, CAL) whilst New Orleans lab colony represented the lab susceptible strain Pools of total RNA was extracted from the whole bodies of 3 day old female mosquitoes that had survived exposure to 0.06% deltamethrin (for GUY, GUA, CAL) . Single colour hybridization experiments were performed using labelled cDNA on the Agilent 'Aedes aegypti detox chip plus': A-MTAB-574. Four unique biological replicates per population were used in the study

2015-11-08 | E-MTAB-4022 | biostudies-arrayexpress

Project description:16S French Guiana Ants (Hymenoptera: Formicidae)

| PRJNA779056 | ENA

Macrophage response towards infection by the Leishmania-viral endosymbiont duo

Project description:Leishmania RNA virus 1 (LRV1) is a double stranded RNA (dsRNA) virus found in some strains of the human protozoan parasite Leishmania, the causative agent of leishmaniasis, a neglected tropical disease. Interestingly, the presence of LRV1 inside Leishmania constitutes an important virulence factor which worsens leishmaniasis outcome in a type I interferon (type I IFN) dependent manner and contributes to treatment failure. Understanding how macrophages respond towards Leishmania alone or in combination with LRV1 as well as the role that type I IFNs may play during infection is fundamental to oversee new therapeutic strategies. In order to dissect the macrophage response towards infection, RNA Sequencing (RNA-Seq) was performed on murine wild-type (WT) bone marrow derived macrophages infected with Leishmania guyanensis (Lgy) devoid or not of LRV1 (LgyLRV1- and LgyLRV1+ respectively) or co-infected with LgyLRV1- and Lymphocytic choriomeningitis virus (LCMV) for 8 and 24 hours. Additionally, macrophages were treated with type I IFN (IFNα or IFNβ) after 6 hours of infection.

2022-05-19 | GSE203088 | GEO

Phytophthora in French Guiana

Project description:Phytophthora in French Guiana Raw sequence reads

| PRJNA516694 | ENA

Heliconius erato hydara strain:French Guiana

Project description:Heliconius erato hydara strain:French Guiana Genome sequencing

| PRJNA179310 | ENA

Heliconius erato erato strain:French Guiana

Project description:Heliconius erato erato strain:French Guiana Genome sequencing

| PRJNA179311 | ENA