Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana strain:Col-0

ABSTRACT: Transcriptome sequencing of Arabidopsis flower under Cu-limiting condition

PROVIDER: PRJNA381492 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5410360.fastq.gz	Fastqsanger.gz
	SRR5410361.fastq.gz	Fastqsanger.gz
	SRR5410352.fastq.gz	Fastqsanger.gz
	SRR5410362.fastq.gz	Fastqsanger.gz
	SRR5410353.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Differentially expressed genes in developing seeds of Arabidopsis thaliana accessions Col-0 and C24

Project description:In order to identify differentially expressed genes in developing seeds of Arabidopsis thaliana three different stages of seed development were analysed (9-10, 10-11 and 12-13 days after flower opening) for two Arabidopsis thaliana accessions, Col-0 and C24. For each stage and accession three biological replicates were analysed.

2017-05-21 | GSE94762 | GEO

Arabidopsis thaliana strain:Col-0

Project description:Arabidopsis thaliana transcriptomes of different stages of flower development

| PRJNA233561 | ENA

Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk

Project description:Iron (Fe) and copper (Cu) are essential metal micronutrients that are necessary for many redox reactions. The uptake of these metals is tightly regulated in plants. Some redox processes can alternatively use Fe-containing proteins or Cu-containing proteins, depending on nutritional status. Copper deficiency can rescue a Cucumis melo Fe uptake deficient mutant, and Fe deficiency can result in increased accumulation of Cu. However, the system responsible for Fe-deficiency-regulated Cu-uptake is unknown. To understand the genes and gene networks associated with Fe-deficiency regulated Cu uptake and Fe-Cu cross-talk, we conducted transcriptomic profiling of roots and rosettes of spl7 (a Cu uptake deficient mutant in arabidopsis) and Col-0 (WT) grown under Fe, Cu and simultaneous Fe and Cu deficiency conditions.

2018-03-01 | GSE104916 | GEO

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 WT transcriptomics - WT flower-1 transcriptome

| PRJNA455437 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 WT transcriptomics - WT flower-2 transcriptome

| PRJNA455438 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 WT transcriptomics - WT flower-3 transcriptome

| PRJNA455439 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 WT transcriptomics - WT flower-4 transcriptome

| PRJNA455440 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 goi11/12 transcriptomics - goi11/12 flower-1 transcriptome

| PRJNA455425 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 goi11/12 transcriptomics - goi11/12 flower-2 transcriptome

| PRJNA455426 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 goi11/12 transcriptomics - goi11/12 flower-3 transcriptome

| PRJNA455427 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data