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Mycolicibacterium smegmatis

ABSTRACT: RNA deep sequencing data of the whole transcriptomes of the wild-type and furA triple mutant strains of Mycobacterium smegmatis MC2 155

PROVIDER: PRJNA382447 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5442973_1.fastq.gz	Fastqsanger.gz
	SRR5442973_2.fastq.gz	Fastqsanger.gz
	SRR5442974_1.fastq.gz	Fastqsanger.gz
	SRR5442974_2.fastq.gz	Fastqsanger.gz
	SRR5442975_1.fastq.gz	Fastqsanger.gz

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RNA deep sequencing data of the whole transcriptomes of the wild-type and furA triple mutant strains of Mycobacterium smegmatis MC2 155

Project description:To identify the FurA regulon in Mycobacterium smegmatis MC2 155, we constructed a furA triple mutant with deletion of three furA paralogous genes (MSMEG_6383, MSMEG_3460, and MSMEG_6253) and profiled the transcriptomes of the wild-type and furA triple mutant strains. Differentially expressed genes were identified pair-wisely by means of the edgeR package in R language. 742 genes were differentially expressed in the furA triple mutant compared to the wild-type strain.

2020-04-01 | GSE97620 | GEO

Mycolicibacterium smegmatis MC2 155

Project description:Mycobacterium smegmatis str. MC2 155 genome sequencing

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RNA deep sequencing data of the whole transcriptomes of the wild-type, sigB and sigE mutant strains of Mycobacterium smegmatis MC2 155

Project description:To identify the SigB and SigE regulons in Mycobacterium smegmatis MC2 155, we constructed the sigB and sigE mutant strains and profiled the transcriptomes of the wild-type and mutant strains. Differentially expressed genes were identified pair-wisely by means of the DEGseq package in R language. 110 and 271 genes are differentially expressed in the sigB and sigE mutant strains relative to the wild-type strain, respectively.

2022-03-29 | GSE199475 | GEO

Ribosome Profiling of Mycobacterium smegmatis

Project description:Ribo-seq and RNA-seq of Mycobacterium smegmatis strain mc2 155.

2015-01-01 | E-MTAB-2929 | biostudies-arrayexpress

Expression analysis of Mycobacterium smegmatis delta-MSMEG_0166 mutant

Project description:Investigation of whole genome gene expression level changes in a Mycobacterium smegmatis mc2 155 delta-MSMEG_0166 mutant, compared to the wild-type strain. MSMEG_0166 is a transcriptional regulator in the gntR family. Mutations in MSMEG_0166 result in hypersensitivity to the bactericidal ubiquitin peptide Ub2, as well as oxidative stress caused by either organic or inorganic agents A three chip study using total RNA recovered from three separate wild-type cultures of Mycobacterium smegmatis mc2 155 and three separate cultures of a MSMEG_0166 mutant strain, Mycobacterium smegmatis mc2 155 delta-MSMEG_0166, in which MSMEG_0166 is interupted by the insertion of a hygromycin resistance cassette. Each chip measures the expression level of 6,588 genes from Myobacterium smegmatis with five 60-mer probes per transcript and two replicates of each probe for a total of 65,880 experimental probes.

2011-01-06 | E-GEOD-26474 | biostudies-arrayexpress

Mycolicibacterium smegmatis MC2 155

Project description:Bedaquiline-induced transcriptional response of Mycobacterium smegmatis mc2 155

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Mycolicibacterium smegmatis MC2 155

Project description:Transcriptome of napM-deleted strain in Mycobacterium smegmatis mc2 155

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Mycolicibacterium smegmatis MC2 155

Project description:Transcriptome of napM-deleted strain in Mycobacterium smegmatis mc2 155

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Mycolicibacterium smegmatis MC2 155

Project description:Transcriptome of napM-deleted strain in Mycobacterium smegmatis mc2 155

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Ribosome profiling performed in Mycobacterium smegmatis MC2 155wild type and ORF MSMEG_0945 MSMEG_1916 mutants

Project description:Ribosome profiling performed in Mycobacterium smegmatis MC2 155 wild-type cells versus cells with deletions of genes encoding small ORFs MSMEG_0945 and MSMEG_1916.

2023-04-07 | E-MTAB-12798 | biostudies-arrayexpress

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