Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Drosophila melanogaster

ABSTRACT: DamID for Lola-O

PROVIDER: PRJNA382990 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5448973_1.fastq.gz	Fastqsanger.gz
	SRR5448973_2.fastq.gz	Fastqsanger.gz
	SRR5448975_1.fastq.gz	Fastqsanger.gz
	SRR5448975_2.fastq.gz	Fastqsanger.gz
	SRR5448977_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Drosophila melanogaster

Project description:Targeted DamID for Lola-O

| PRJNA404078 | ENA

Drosophila melanogaster

Project description:Profiling of Lola-N genomic binding in Drosophila with DamID

| PRJNA232382 | ENA

Drosophila melanogaster

Project description:RNA-Sequencing of Wild Type, Lola-F and Lola-Null mutant embryos

| PRJNA360537 | ENA

Drosophila melanogaster

Project description:Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila [DamID-seq]

| PRJNA305509 | ENA

Drosophila melanogaster

Project description:RNA-Sequencing of Wild Type and lola-O mutant embryos

| PRJNA404972 | ENA

Tissue-specific DamID profiling of chromatin proteins in Drosophila melanogaster

Project description:Analysis of gene expression regulation typically requires identification of genomic sites where regulatory proteins bind. For this purpose, ChIP and DamID methods applied to cell lines or model organisms are now routinely used, even in selected cell types. In this work, we present modifications to experimental DamID protocol, as well as a custom data processing algorithm that allows to confidently identify genomic sites enriched with the proteins of interest. This algorithm is implemented in Perl and is also available as executable files thereby making DamID analysis relatively straightforward. Finally, we demonstrate how this pipeline performs when fed with real experimental data.

2016-08-30 | GSE86205 | GEO

Drosophila melanogaster

Project description:Identifying targets of DSX with DamID-seq

| PRJNA137151 | ENA

Drosophila melanogaster

Project description:Identifying targets of DSX with DamID-chip

| PRJNA214014 | ENA

Drosophila melanogaster

Project description:Genome-wide HP1a occupancy measured by DamID-seq

| PRJNA326778 | ENA

Drosophila melanogaster

Project description:Wash regulates lamin-dependent nuclear genome organization [DamID]