Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Saccharomyces cerevisiae

ABSTRACT: Analysis of Ribosome Protected Fragments of mRNAs from yeast strains either expressing Rio1p or depleted of Rio1p

PROVIDER: PRJNA384766 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5485720.fastq.gz	Fastqsanger.gz
	SRR5485721.fastq.gz	Fastqsanger.gz
	SRR5485722.fastq.gz	Fastqsanger.gz
	SRR5485723.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Saccharomyces cerevisiae

Project description:Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments

| PRJNA251988 | ENA

Genome-wide location analysis of Abf1 and Reb1 in Saccharomyces cerevisiae

Project description:Abf1 and Reb1, two general regulatory factors playing roles at promoters and other genome functional sites in budding yeast, were mapped genome-wide by ChIP-sequencing using strains expressing TAP-tagged versions of the proteins. As expected on the basis of previous in silico analysis of promoter regions, we found that these factors are enriched at the promoters of ribosome biogenesis (Ribi) genes, a large regulon of more than 200 genes required for ribosome biosynthesis and assembly, and known to be coordinately regulated in response to nutrient availability and cellular growth rate.

2017-05-04 | GSE81112 | GEO

Analysis of Ribosome Protected Fragments of mRNAs from yeast strains either expressing Rio1p or depleted of Rio1p

Project description:mRNAs bound by ribosomes from yeast cells were analysed in order to determine the exact position of ribosomes in the presence or absence of Rio1p. Beside total Ribosome Protected Fragments (RPFs), RPFs from mRNAs protected by immature pre-40S pre-ribosomes was also analysed. The analysis showed that immature 40S ribosomes can carry out translation and their premature entry into translation is hindered by Rio1p.

2017-08-16 | GSE98333 | GEO

Saccharomyces cerevisiae

Project description:Saccharomyces cerevisiae Assembly of recombinant yeast strains expressing fungal amylases

| PRJNA524778 | ENA

Expression data of antibody fragments from Saccharomyces cerevisiae

Project description:Saccharomyces cerevisiae has been used as a secretion host for production of various products, including pharmaceuticals. However, few antibody molecules have been functionally expressed in S. cerevisiae due to the incompatible surface glycosylation. Our laboratory previously isolated a group of yeast mutant strains with different α-amylase secretory capacities, and these evolved strains have showed advantages for production of some heterologous proteins. However, it is not known whether these secretory strains are generally suitable for pharmaceutical protein production. Here, three non-glycosylated antibody fragments with different configurations (Ran-Fab fragment Ranibizumab, Pex-the scFv peptide Pexelizumab, and Nan-a single V-type domain) were successfully expressed and secreted in three background strains with different secretory capacities, including HA (wild type), MA (evolved strain), and LA (evolved strain). However, the secretion of Ran and Nan were positively correlated with the strains’ secretory capacity, while Pex was most efficiently secreted in the parental strain. Therefore, transcriptional analysis was performed to explore the fundamental changes triggered by the expression of the different pharmaceutical proteins in these selected yeast strains.

2021-07-06 | GSE179391 | GEO

Saccharomyces cerevisiae - Quorum Sensing

Project description:Comparison of 3 yeast strains grown under nitrogen starvation, nitrogen rich conditions, with and without quorum sensing molecule 2-phenylethanol

2025-07-08 | PXD061716 | JPOST Repository

Saccharomyces cerevisiae

Project description:Ribosome profiling study of dom34 and hbs1 knockout strains using short (16-nt) and long (28-nt) monosome-protected footprints and disome-protected footprints

| PRJNA230577 | ENA

Saccharomyces cerevisiae

Project description:Ribosome profiling of dhh1∆ yeast

| PRJNA348115 | ENA

Saccharomyces cerevisiae

Project description:Ribosome profiling of whi3 mutant yeast

| PRJNA221377 | ENA

Saccharomyces cerevisiae

Project description:Determinants of ribosome density in yeast

| PRJNA231673 | ENA