Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Peat metagenome

ABSTRACT: peat metagenome Metagenome

PROVIDER: PRJNA386568 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	20100900_E1D_1.fasta.gz	Fasta.gz
	20100900_E1D_2.fasta.gz	Fasta.gz
	20100900_E1D_11.fasta.gz	Fasta.gz
	20100900_E1D_10.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 11910

Similar Datasets

peat metagenome

Project description:peat metagenome Metagenome

| PRJNA431733 | ENA

peat metagenome

Project description:peat metagenome Metagenome

| PRJNA339655 | ENA

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

Dual roles of the Arabidopsis PEAT complex in histone H2A deubiquitination and H4K5 acetylation [ChIP-seq]

Project description:Histone H2A monoubiquitination is associated with transcriptional repression and needs to be removed by deubiquitinases to facilitate gene transcription in eukaryotes. However, the deubiquitinase responsible for genome-wide H2A deubiquitination in plants has yet to be identified. We found that UBP5, an ubiquitin-specific protease, interacts with a previously identified PEAT (PWWP-EPCR-ARID-TRB) complex to form a larger version of PEAT complex in Arabidopsis thaliana. UBP5 functions as an H2A deubiquitinase in a nucleosome substrate-dependent manner in vitro and mediates H2A deubiquitination at the whole-genome level in vivo. Moreover, our results indicated that the histone acetyltransferases HAM1 and HAM2 (HAM1/2), catalytic subunits of the NuA4 histone acetyltransferase complex, are also part of the PEAT complex at PEAT target genomic loci. Within the PEAT complex, the PWWP components (PWWP1, PWWP2 and PWWP3) directly interact with UBP5 and are necessary for UBP5-mediated H2A deubiquitination, while the EPCR components (EPCR1 and EPCR2) directly interact with HAM1/2 and are required for HAM1/2-mediated H4K5 acetylation. This study identifies previously unknown regulators of H2A deubiquitination and H4K5 acetylation and illustrates how these processes collaborate at the whole-genome level.

2023-10-08 | GSE232670 | GEO

The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [ChIP-Seq]

Project description:We found PEAT complexes mediate histone deacetylation and heterochromatin condensation and thereby facilitate heterochromatin silencing.

2018-06-21 | GSE116065 | GEO

The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [smallRNA-Seq]

Project description:We found PEAT complexes mediate histone deacetylation and heterochromatin condensation and thereby facilitate heterochromatin silencing.

2018-06-21 | GSE116067 | GEO

peat metagenome

Project description:peat metagenome Raw sequence reads

| PRJNA549573 | ENA

Peat metagenome

Project description:Peat metagenome Raw sequence reads

| PRJNA488558 | ENA

peat metagenome

Project description:peat metagenome Raw sequence reads

| PRJNA414757 | ENA

peat metagenome

Project description:peat metagenome Raw sequence reads