Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sus scrofa

ABSTRACT: Identification of differentially expressed genes in longissimus dorsi muscle between Wei and Yorkshire pigs using RNA-sequencing

PROVIDER: PRJNA387276 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5577190_1.fastq.gz	Fastqsanger.gz
	SRR5577190_2.fastq.gz	Fastqsanger.gz
	SRR5577191_1.fastq.gz	Fastqsanger.gz
	SRR5577191_2.fastq.gz	Fastqsanger.gz
	SRR5577192_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Sus scrofa

Project description:Identification of genes in longissimus dorsi muscle differentially expressed between Wannanhua and Yorkshire pigs using RNA sequencing

| PRJNA302287 | ENA

Identification of differentially expressed genes in longissimus dorsi muscle between Wei and Yorkshire pigs using RNA-sequencing

Project description:Intramuscular fat (IMF) content is an important trait closely correlated with meat quality, which is highly variable among swine breeds from diverse genetic backgrounds. In order to elucidate the molecular mechanism underlying porcine meat quality, we adopted RNA-sequencing to detect transcriptome in the longissimus dorsi muscle of Wei pigs (a Chinese indigenous breed) and Yorkshire pigs (a Western lean-type breed) with different IMF content. A total of 717 differentially expressed genes (DEGs) were identified in our study, with 323 up-regulated and 394 down-regulated genes in Wei pigs compared with Yorkshire pigs. GO analysis showed that DEGs significantly related to muscle proliferation and development, lipid storage and catabolic, extracellular matrix structural constituent, and neutral amino acid transmembrane transporter activity. Pathway analysis revealed that DEGs associated with fatty acid metabolism, steroid biosynthesis, glycerophospholipid metabolism, protein digestion and absorption, and amino acid metabolism. Quantitative real time PCR confirmed the differential expression of 11 selected DEGs from both pig breeds. The results provide useful information to investigate the transcriptional profiling in skeletal muscle of different pig breeds with divergent phenotypes, and several DEGs can be taken as functional candidate genes for affecting pork quality.

2017-05-20 | GSE99092 | GEO

Expression data from longissimus dorsi muscle of Shaziling pig at 25-days old and longissimus dorsi musle of Yorkshire pig at 25-days old

Project description:To characterize the mechanism of porcine skeletal muscle development, transcriptome analysis of longissimus dorsi muscle between Shaziling and Yorkshire pig breeds Three male Shaziling pigs and three male Yorkshire pigs from two full-sibs families at 25-days old were slaughtered

2016-06-23 | E-GEOD-70673 | biostudies-arrayexpress

Sus scrofa

Project description:Expression data from longissimus dorsi muscle of Meishan pigs

| PRJNA132261 | ENA

Sus scrofa

Project description:Gene expression data from longissimus dorsi muscle 25-day-old male pigs

| PRJNA345348 | ENA

Sus scrofa

Project description:Expression data from longissimus dorsi muscle of Shaziling pig at 25-days old and longissimus dorsi musle of Yorkshire pig at 25-days old

| PRJNA289358 | ENA

Sus scrofa

Project description:Sequencing of miRNA transcriptome sequencing of longissimus dorsi muscle in large white pigs

| PRJNA824228 | ENA

Expression data from longissimus dorsi muscle of Shaziling pig at 25-days old and longissimus dorsi musle of Yorkshire pig at 25-days old

Project description:To characterize the mechanism of porcine skeletal muscle development, transcriptome analysis of longissimus dorsi muscle between Shaziling and Yorkshire pig breeds

2016-06-23 | GSE70673 | GEO

Sus scrofa

Project description:Longissimus dorsi muscle transcriptome in pure and crossbred Iberian pigs at birth and growing stages

| PRJNA341938 | ENA

Sus scrofa scrofa

Project description:circRNAs expression profiling in longissimus dorsi muscle from pigs with high (H) and low (L) IMF

| PRJNA796726 | ENA