Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Syngnathus scovelli

ABSTRACT: Syngnathus scovelli Raw sequence reads

PROVIDER: PRJNA389920 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5783120_1.fastq.gz	Fastqsanger.gz
	SRR5783120_2.fastq.gz	Fastqsanger.gz
	SRR5783121_1.fastq.gz	Fastqsanger.gz
	SRR5783121_2.fastq.gz	Fastqsanger.gz
	SRR5783122_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

Syngnathus scovelli

Project description:Syngnathus scovelli liver raw sequence reads

| PRJNA295858 | ENA

Syngnathus scovelli

Project description:Syngnathus scovelli EE2 brood pouches Raw sequence reads

| PRJNA980712 | ENA

Syngnathus scovelli

Project description:Syngnathus scovelli overview

| PRJNA295892 | ENA

Syngnathus scovelli

Project description:Syngnathus scovelli RAD-seq

| PRJNA327313 | ENA

Syngnathus scovelli

Project description:Syngnathus scovelli Transcriptome or Gene expression

| PRJNA197211 | ENA

Syngnathus scovelli

Project description:Syngnathus scovelli Transcriptome or Gene expression

| PRJNA391779 | ENA

Syngnathus scovelli

Project description:Syngnathus scovelli RAD-seq of a single population

| PRJNA358088 | ENA

Syngnathus scovelli

Project description:A reference genome for the Gulf pipefish, Syngnathus scovelli and associated virus

| PRJNA355893 | ENA

Improvements to the Gulf pipefish <i>Syngnathus scovelli</i> genome.

Project description:The Gulf pipefish Syngnathus scovelli has emerged as an important species for studying sexual selection, development, and physiology. Comparative evolutionary genomics research involving fishes from Syngnathidae depends on having a high-quality genome assembly and annotation. However, the first S. scovelli genome assembled using short-read sequences and a smaller RNA-sequence dataset has limited contiguity and a relatively poor annotation. Here, using PacBio long-read high-fidelity sequences and a proximity ligation library, we generate an improved assembly to obtain 22 chromosome-level scaffolds. Compared to the first assembly, the gaps in the improved assembly are smaller, the N75 is larger, and our genome is ~95% BUSCO complete. Using a large body of RNA-Seq reads from different tissue types and NCBI's Eukaryotic Annotation Pipeline, we discovered 28,162 genes, of which 8,061 are non-coding genes. Our new genome assembly and annotation are tagged as a RefSeq genome by NCBI and provide enhanced resources for research work involving S. scovelli..

| S-EPMC10038202 | biostudies-literature

Syngnathus floridae

Project description:Syngnathus floridae

| PRJNA481557 | ENA