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Clostridium beijerinckii ATCC 35702 isolate:SA-1

ABSTRACT: Clostridium beijerinckii ATCC 35702 isolate:SA-1 Transcriptome or Gene expression

PROVIDER: PRJNA390299 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5684990.fastq.gz	Fastqsanger.gz
	SRR5684990_1.fastq.gz	Fastqsanger.gz
	SRR5684990_2.fastq.gz	Fastqsanger.gz
	SRR5684987.fastq.gz	Fastqsanger.gz
	SRR5684987_1.fastq.gz	Fastqsanger.gz

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Clostridium beijerinckii ATCC 35702 strain:SA-1

Project description:Clostridium beijerinckii ATCC 35702 strain:SA-1 Genome sequencing

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Clostridium beijerinckii fermentation time course

Project description:This SuperSeries is composed of the following subset Series: GSE12358: Clostridium beijerinckii NCIMB 8052 wild-type fermentation time course GSE12359: Clostridium beijerinckii BA101 mutant fermentation time course Refer to individual Series

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Effect of furfural on the Clostridium beijerinckii NCIMB 8052 transcriptome

Project description:Furfural is the prevalent microbial inhibitor generated during pretreatment and hydrolysis of lignocellulosic biomass to monomeric sugars, but the molecular response of Clostridium beijerinckii NCIMB 8052 to this compound is unknown. To discern the effect of furfural on C. beijerinckii and to gain insights into the molecular mechanisms of action and detoxification, we studied the physiological changes of furfural-stressed cultures during acetone-butanol-ethanol (ABE) fermentation, and profiled differentially expressed genes by genome-wide transcriptional analysis. C. beijerinckii exposed to furfural stress during the acidogenic growth phase produced 13% more ABE than the unstressed control. The growth and ABE by C. beijerinckii ceased following exposure to furfural stress during the solventogenic growth phase. By comparing gene expression of furfural-stressed cultures to that of the unstressed control, at both the acidogenic and solventogenic phases, we ascertained that furfural induces expression of several genes including those that code for heat shock proteins, redox enzymes and cofactor associated proteins, and ATP-binding cassette transporters, and represses genes belonging to the phosphotransferase system, two-component system, chemotaxis and cell motility. Based on these results, we discuss the underpinning for furfural-mediated change in ABE fermentation by the solventogenic Clostridium species.

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Clostridium beijerinckii BA101 mutant fermentation time course

Project description:The fermentation culture of Clostridium beijerinckii mutant BA101 was monitored from exponential growth to stationary phase. During this period the culture underwent a shift from acidogenesis to solventogenesis. Acetone and butanol production was initiated with the onset of the solventogenic phase. Using DNA microarray changes in gene expression were examined during the transitional period. RNA samples were taken from Clostridium beijerinckii mutant BA101 fermentation culture at individual time points during the acidogenic phase and the solventogenic phase. The samples were used for microarray hybridization.

2009-06-02 | E-GEOD-12359 | biostudies-arrayexpress

Clostridium beijerinckii NCIMB 8052 wild-type fermentation time course

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Clostridium beijerinckii NCIMB 8052 wild-type fermentation time course

Project description:The Clostridium beijerinckii NCIMB 8052 wild-type culture was monitored from exponential growth to stationary phase. During this period the culture underwent a shift from acidogenesis to solventogenesis. Acetone and butanol production was initiated with the onset of the solventogenic phase. Using DNA microarray changes in gene expression were examined during the transitional period. RNA samples were taken from Clostridium beijerinckii NCIMB 8052 wild-type fermentation culture at individual time points during the acidogenic phase and the solventogenic phase. The samples were used for microarray hybridization.

2009-06-02 | E-GEOD-12358 | biostudies-arrayexpress

Enhanced solvent titer in the fermentation of Clostridium beijerinckii through application of metabolic controls

Project description:Clostridium beijerinckii is an anaerobic strain and well known for acetone-ethanol-butanol (ABE) fermentation using carbohydrates derived from cellulose or starch. During ABE fermentation, various byproducts are formed, mainly including acids (acetate, butyrate and lactate) and gas (hydrogen and carbon dioxide). recently, we found that Clostridium beijerinckii is able to produce a new product that had never been reported before and tightly regulated by pH and nitrogen source.

2021-12-02 | E-MTAB-11154 | biostudies-arrayexpress

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