Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Etheostoma spectabile, Etheostoma fragi, Etheostoma uniporum, Etheostoma burri, Etheostoma caeruleum

ABSTRACT: Orangethroat darter, strawberry darter, current darter, brook darter, rainbow darter Raw sequence reads

PROVIDER: PRJNA395260 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5859750.fastq.gz	Fastqsanger.gz
	SRR5859751.fastq.gz	Fastqsanger.gz
	SRR5859752.fastq.gz	Fastqsanger.gz
	SRR5859753.fastq.gz	Fastqsanger.gz
	SRR5859754.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Gene expression rhythms in rainbow darter male (Etheostoma caeruleum) across an annual reproductive cycle

Project description:We have been studying intersex in male rainbow darter (Etheostoma caeruleum) associated with exposure to sewage effluents. To understand changes in the gene transcriptome associated with intersex it was necessary to have a better understanding of normal annual changes in the transcriptome. The goal of this research is to identify patterns of gene expression associated with the different stages of gonad development during the annual cycle. The studies of molecular pathways involve in ovarian or testis development has been poorly studied. While most studies focus on female ovarian changes, there is a gap in understanding testis development. A customized second generation microarray for rainbow darter (8x15k) was used to identify patterns of gene expression -in terms of mRNA abundance- in male rainbow darter gonads during an annual cycle.

2014-05-22 | GSE57865 | GEO

Gene expression rhythms in rainbow darter male (Etheostoma caeruleum) across an annual reproductive cycle

2014-05-22 | E-GEOD-57865 | biostudies-arrayexpress

Etheostoma caeruleum

Project description:Gene expression rhythms in rainbow darter male (Etheostoma caeruleum) across an annual reproductive cycle

| PRJNA248288 | ENA

Etheostoma caeruleum

Project description:Getting inside of the molecular pathways associated with intersex in the rainbow darter (Etheostoma caeruleum)

| PRJNA248286 | ENA

Etheostoma caeruleum

Project description:Spatail gradient approach application in assessing changes in the rainbow darter (Etheostome caeruleum) liver transcriptome in the Grand River, Ontario

| PRJNA376010 | ENA

Etheostoma caeruleum

Project description:Temporal changes in the rainbow darter (Etheostome caeruleum) liver transcriptome associated with sewage treatment plant upgrades in the Grand River, Ontario

| PRJNA376009 | ENA

Getting inside of the molecular pathways associated with intersex in the rainbow darter (Etheostoma caeruleum)

Project description:Rainbow darter (Etheostoma caeruleum) are a small benthic fish found in North America. This species is sensitive to sewage effluent in the environment, showing the presence of intersex in up to 80% of males in near-field areas in the Grand River, ON. To learn more about the molecular events associated with intersex, we developed a customized oligonucleotide microarray (4x180K) with next generation sequencing (454 Roche) to characterize molecular responses in the gonad. Transcriptomics was performed on both males and females from both a reference site and a polluted site. Males with and without intersex from the polluted site were compared to the control males. Rainbow darter were sampled from from the Grand River in May 2011. Fish were selected according to the location, gonad maturity, and intersex index. Reference fish were taken from the upstream to the urban area; exposed fish were taken from downstream of from Kitchener MWWE treatment plant.

2014-05-22 | E-GEOD-57394 | biostudies-arrayexpress

Getting inside of the molecular pathways associated with intersex in the rainbow darter (Etheostoma caeruleum)

2014-05-22 | GSE57394 | GEO

Spatail gradient approach application in assessing changes in the rainbow darter (Etheostome caeruleum) liver transcriptome in the Grand River, Ontario

Project description:In this study, adult male rainbow darter (Etheostoma caeruleum) were collected from nine sites located at different distances from two wastewater treatment plants (WWTPs) in the Grand River, Ontario, Canada. The goal of this project was to see if the liver transcriptome of fish residing downstream of the two WWTPs differs from the non-exposed fish. Further, this research was also addressing the affects of differnent reference site selection on gene expression patterns, and their subsequent interpretation.The RNA from male rainbow darter was exctracted from liver tissue and used for further gene expression analysis.

2017-02-21 | GSE95082 | GEO

Temporal changes in the rainbow darter (Etheostome caeruleum) liver transcriptome associated with sewage treatment plant upgrades in the Grand River, Ontario

Project description:In this study, adult male rainbow darter were collected from three sites in the Grand River in the fall season for four consecutive years (2011-2014), from 3 sites: a reference site (US2) located in the non-urbanized area, and two exposure sites (DSW and DSK1) located dowstrem of two secondary wastewater treatment palnts (WWTP) (Waterloo and Kitchener). Kitchener WWTP has been undergone infrastructure upgrades that were initiated in the summer of 2012. The goal of this project was to see whether the implemented upgrades can be reflected in the liver transcriptome response indicative of recovery.The RNA from male rainbow darter was exctracted from liver tissue and used for further gene expression analysis.

2017-02-21 | GSE95083 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data