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GABP-dependent gene regulation in T cells

ABSTRACT: GABP-dependent gene regulation in T cells

PROVIDER: PRJNA395977 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5874551.fastq.gz	Fastqsanger.gz
	SRR5874552.fastq.gz	Fastqsanger.gz

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RNA-seq identified GLI1 as the target gene for GABP

Project description:We performed RNA-seq based transcriptomic analysis to evaluate differential protein expression in the kidneys of GABP overexpressing mice in db/m and GABP knockdown mice in db/db. The cluster analysis heat map shows the genetic changes . Compared with db/m mice, 734 differentially expressed genes, 525 upregulated genes and 209 upregulated genes . Compared with db/db mice, 82 genes were up-regulated and 82 genes were down-regulated in the kidneys of mice with GABP knockdown in db/db . Further, the classical pathway map in IPA database found that cell growth, proliferation, organ development and other pathways were activated after GABP overexpression. Cell growth, proliferation, organ development and other pathways were inhibited . It was further confirmed that GABP was associated with proliferation. Among differentially expressed genes, there were 9 differentially expressed genes up-regulated by GABP overexpression and down-regulated by GABP knockdown . Through the analysis of Ingenuity Pathway Analysis database, GABP and GLI1 were most closely related .

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GABP-dependent gene regulation in T cells

Project description:This SuperSeries is composed of the SubSeries listed below.

2017-07-28 | GSE101937 | GEO

RNA-seq identified GLI1 as the target gene for GABP

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