Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Jellyfish metagenome

ABSTRACT: Jellyfish Metagenome

PROVIDER: PRJNA397182 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6780560.fastq.gz	Fastqsanger.gz
	SRR6780570.fastq.gz	Fastqsanger.gz
	SRR6780561.fastq.gz	Fastqsanger.gz
	SRR6780571.fastq.gz	Fastqsanger.gz
	SRR6780552.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

Transcription profiling of polyp to jellyfish transition in Aurelia aurita (moon jelly).

Project description:Identification of differentially expressed genes during polyp to jellyfish transition in Aurelia aurita

2013-11-13 | E-MTAB-1960 | biostudies-arrayexpress

jellyfish detritus degrading microbiome

Project description:Jellyfish blooms represent a significant, but largely overlooked, source of labile organic matter (jelly-OM) in the ocean, characterized by high protein content with a low C:N ratio. The bloom-decay cycle of jellyfish in coastal waters are important vehicles for carbon export to the ocean’s interior. To accurately incorporate them into biogeochemical models, the interactions between microbes and jelly-OM have yet to be fully characterized. We conducted jelly-OM enrichment experiments to simulate the scenario experienced by the coastal microbiome after the decay of a jellyfish bloom. We combined metagenomics, endo- and exo-metaproteomic approaches to obtain a mechanistic understanding on the metabolic network operated by the jelly-OM degrading bacterial consortium.

2023-10-24 | PXD036989 | Pride

Jellyfish Nemopilema nomurai nematocyst venom LC-MSMS

Project description:The scyphozoan jellyfish Nemopilema nomurai are common blooming species in China.The venomous characteristics of jellyfish Nemopilema nomurai is largely attributed to their complex and elaborate venom delivery system: the stinging cells, or nematocytes. These specialized cells synthesize and secrete unique intracellular organelles called nematocysts. Nematocysts with heterogeneous sizes and morphologies may contain different toxic components that exert diverse pharmacological and physiological activities such as hemolysis, cytolysis and proteolysis for defense and prey capture. We modified the previous method of nematocyst preparation using density centrifugation to purify undischarged nematocysts from jellyfish Nemopilema nomurai tentacles. Ultimately, isorhiza-type were successfully purified.Then we used purified nematocysts for proteomic study to identify sting-related toxins in Nemopilema nomurai nematocysts.

2018-11-30 | PXD011684 | Pride

Jellyfish Cyanea capillata nematocyst venoms LC-MSMS

Project description:The scyphozoan jellyfish Cyanea capillata are common blooming species in China.The venomous characteristics of jellyfish Cyanea capillata is largely attributed to their complex and elaborate venom delivery system: the stinging cells, or nematocytes. These specialized cells synthesize and secrete unique intracellular organelles called nematocysts. Nematocysts with heterogeneous sizes and morphologies may contain different toxic components that exert diverse pharmacological and physiological activities such as hemolysis, cytolysis and proteolysis for defense and prey capture. We modified the previous method of nematocyst preparation using density centrifugation to purify undischarged nematocysts from jellyfish Cyanea capillata tentacles. Ultimately, mastigophore-type nematocysts were successfully purified.Then we used purified nematocysts for proteomic study to identify sting-related toxins in Cyanea capillata nematocysts.

2018-11-30 | PXD011685 | Pride

Soil metagenome from avocado orchards in Channybearup, Western Australia in 2024

Project description:Metagenome data from soil samples were collected at 0 to 10cm deep from 2 avocado orchards in Channybearup, Western Australia, in 2024. Amplicon sequence variant (ASV) tables were constructed based on the DADA2 pipeline with default parameters.

2025-06-15 | GSE298403 | GEO

jellyfish metagenome

Project description:Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 28_T2E_3212KB8

| PRJNA465881 | ENA

jellyfish metagenome

Project description:Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 29_T1E_3236KB8

| PRJNA465882 | ENA

jellyfish metagenome

Project description:Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 30_T1F_3236KB8

| PRJNA465883 | ENA

jellyfish metagenome

Project description:Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 35_T1E_3212EL1

| PRJNA465888 | ENA

jellyfish metagenome

Project description:Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 38_T1E_3236EL1

| PRJNA465891 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data