Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Identification of key genes involved in pentose metabolism in Kalmanozyma brasiliensis

PROVIDER: PRJNA401334 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6002300_1.fastq.gz	Fastqsanger.gz
	SRR6002300_2.fastq.gz	Fastqsanger.gz
	SRR6002301_1.fastq.gz	Fastqsanger.gz
	SRR6002301_2.fastq.gz	Fastqsanger.gz
	SRR6002302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Petunia x hybrida

Project description:Identification of genes involved in aromatic amino acid metabolism

| PRJNA290001 | ENA

Project description:Identification of key genes involved in abiraterone resistance by GeCKO scaning

| PRJNA780179 | ENA

Omics multi-layers networks and identification of the key genes and miRNAs involved in fat storage and metabolism: systems biology approach

Project description:Omics multi-layers networks and identification of the key genes and miRNAs involved in fat storage and metabolism: systems biology approach

| PRJNA504020 | ENA

Genes affected by L-arabinose in Salmonella Typhimurium biofilms

Project description:Genes were differentially expressed in wild-type Salmonella Typhimurium biofilms and an ΔaraE mutant when grown in the presence of 5mM or 40mM L-arabinose. Multiple biological pathways were impacted, including genes involved in arabinose metabolism, curli fimbriae, pentose phosphae pathway, TCA cycle. amino acid synthesis, pyrimidine and purine biosynthesis, and ATP synthesis.

2021-03-31 | GSE171196 | GEO

Transcription profiling of murine macrophages after infection with Paracoccidioides brasiliensis

Project description:Identification of transcripts in mouse peritoneal macrophages infected by P. brasiliensis yeasts cells

2007-08-31 | E-MEXP-1093 | biostudies-arrayexpress

Transcription profiling of mycelium and yeast cells of Paracoccidioides brasiliensis

Project description:Identification of differential mRNAs produced in the mycelium and yeast cells of Paracoccidioides brasiliensis

2004-04-28 | E-MEXP-103 | biostudies-arrayexpress

Transcriptomic response of grafted tomato seedlings leaves after root inoculations with rhizobacteria Azospirillum brasiliensis and Paraburkholderia graminis

Project description:Characterization of the transcriptomic responses of grafted tomato seedlings leaves after the root inoculations with the two beneficial microorganisms Paraburkholderia graminis and Azospirillum brasiliensis. Paraburkholderia graminis treatment led to a higher number of differentially expressed genes than Azospirillum brasiliensis, with a higher amount of up-regulated than down-regulated genes for both treatments. These DEGs were manly involved in response to oxidative stress, response to biotic and abiotic stress, water transport, regulation of transcription and hormones. Only few DEGs were shared among the two treatments, including genes involved in flowering time and in tolerance against abiotic stresses.

2022-10-16 | E-MTAB-11398 | biostudies-arrayexpress

Expression analysis of genes related to cold tolerance in Dendroctonus valens

Project description:To identify genes relevant to cold tolerance and the process of overwintering, we sequenced the transcriptomes of wintering and non-wintering adult and larval D. valens using the Illumina HiSeq platform. Differential expression analysis methods for other non-model organisms were used to compare transcript abundances in adults and larvae at two time periods, followed by the identification of functions and metabolic pathways related to genes associated with cold tolerance. We detected 4387 and 6091 differentially expressed genes (DEGs) between sampling dates in larvae and adults, respectively, and 1140 common DEGs, including genes encoding protein phosphatase, very long-chain fatty acids protein, cytochrome P450, and putative leucine-rich repeat-containing proteins. In a GO enrichment analysis, 1,140 genes were assigned to 44 terms, with significant enrichment for cellulase activity, hydrolase activity, and carbohydrate metabolism. KEGG classification and enrichment analyses showed that the lysosomal and purine metabolism pathways involved the most DEGs, the highly enriched terms included autophagy - animal, pentose and glucuronate interconversions and lysosomal processes. We identified 138 candidate genes associated with cold tolerance, including genes with established roles in this trait (e.g., genes encoding trehalose transporter, fructose-1,6-bisphosphatase, and trehalase). Our comparative transcriptome analysis of adult and larval D. valens in different conditions provides basic data for the discovery of key genes and molecular mechanisms underlying cold tolerance.

2021-01-19 | GSE156139 | GEO

Project description:Identification of genes involved in renal fibrosis

| PRJNA770300 | ENA

Homo sapiens

Project description:Identification of genes involved in re-epithelialization

| PRJNA300415 | ENA