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Melampsora larici-populina 98AG31

ABSTRACT: Melampsora larici-populina 98AG31 S1 mapping population resequencing - A112 genome sequencing

PROVIDER: PRJNA403627 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR6828068_1.fastq.gz	Fastqsanger.gz
	SRR6828068_2.fastq.gz	Fastqsanger.gz

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Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina

Project description:Dikaryotic rust fungi maintain two distinct haploid nuclei for most of their life cycle, making their large, repeat-rich genomes difficult to assemble and phase. Here we present haplotype-phased, near chromosome-scale genome assemblies for the poplar rust pathogens Melampsora larici-populina 98AG31 and Melampsora allii-populina 12AY07, generated using PacBio HiFi sequencing and Hi-C-guided scaffolding. For each species, we resolve 18 chromosomes per haplotype, providing the first chromosome-level representations of poplar rust fungal species. M. larici-populina diploid assembly spans ~203 Mb, while M. allii-populina reaches ~416 Mb, with high completeness and strong collinearity between haplotypes.

2026-06-24 | GSE328168 | GEO

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A060 genome sequencing

| PRJNA403588 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A007 genome sequencing

| PRJNA403589 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A018 genome sequencing

| PRJNA403608 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A020 genome sequencing

| PRJNA403609 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A033 genome sequencing

| PRJNA403610 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A002 genome sequencing

| PRJNA403612 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A049 genome sequencing

| PRJNA403616 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A040 genome sequencing

| PRJNA403617 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A149 genome sequencing

| PRJNA403620 | ENA

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