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Melampsora larici-populina 98AG31

ABSTRACT: Melampsora larici-populina 98AG31 S1 mapping population resequencing - A110 genome sequencing

PROVIDER: PRJNA403641 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR6828012_1.fastq.gz	Fastqsanger.gz
	SRR6828012_2.fastq.gz	Fastqsanger.gz

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Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina

Project description:Dikaryotic rust fungi maintain two distinct haploid nuclei for most of their life cycle, making their large, repeat-rich genomes difficult to assemble and phase. Here we present haplotype-phased, near chromosome-scale genome assemblies for the poplar rust pathogens Melampsora larici-populina 98AG31 and Melampsora allii-populina 12AY07, generated using PacBio HiFi sequencing and Hi-C-guided scaffolding. For each species, we resolve 18 chromosomes per haplotype, providing the first chromosome-level representations of poplar rust fungal species. M. larici-populina diploid assembly spans ~203 Mb, while M. allii-populina reaches ~416 Mb, with high completeness and strong collinearity between haplotypes.

2026-06-24 | GSE328168 | GEO

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A109 genome sequencing

| PRJNA403646 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A105 genome sequencing

| PRJNA403647 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A145 genome sequencing

| PRJNA403648 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A031 genome sequencing

| PRJNA403649 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A106 genome sequencing

| PRJNA403650 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A101 genome sequencing

| PRJNA403651 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A146 genome sequencing

| PRJNA403652 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A124 genome sequencing

| PRJNA403657 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A129 genome sequencing

| PRJNA403658 | ENA

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