Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fecal of wild Sichuan snub-nosed monkeys

ABSTRACT: Fecal bacterial diversity of wild Sichuan snub-nosed monkeys

PROVIDER: PRJNA412441 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6111133.fastq.gz	Fastqsanger.gz
	SRR6111134.fastq.gz	Fastqsanger.gz
	SRR6111135.fastq.gz	Fastqsanger.gz
	SRR6111136.fastq.gz	Fastqsanger.gz
	SRR6111137.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

16S rRNA sequencing data generated from fecal samples of wild and captive Sichuan snub-nosed monkeys (Rhinopithecus roxellana)

Project description:16S rRNA sequencing data generated from fecal samples of wild and captive Sichuan snub-nosed monkeys (Rhinopithecus roxellana) Metagenome

| PRJNA971738 | ENA

Golden snub-nosed monkey transcriptome data used for gene annotation

Project description:To optimize the golden snub-nosed monkey genome annotation, one RNA library of mixed tissues from one individual were constructed using the Illumina mRNA-Seq Prep Kit.

2014-10-19 | GSE53597 | GEO

Golden snub-nosed monkey transcriptome data used for gene annotation

Project description:To optimize the golden snub-nosed monkey genome annotation, one RNA library of mixed tissues from one individual were constructed using the Illumina mRNA-Seq Prep Kit. We sequenced mixed tissues using the Illumina HiSeq 2000 platform.

2014-10-19 | E-GEOD-53597 | biostudies-arrayexpress

Rhinopithecus

Project description:Snub-nosed monkeys Genome resequencing

| PRJNA271514 | ENA

Project description:Golden snub-nosed monkeys Blood Transcriptome

| PRJNA580110 | ENA

Project description:Yunnan snub-nosed monkeys and livestock gut microbiome

| PRJNA1285119 | ENA

gut metagenome

Project description:Gastrointestinal tract of golden snub-nosed monkeys Genome sequencing

| PRJNA261867 | ENA

Diarrhea-Associated Intestinal Microbiota in Captive Sichuan Golden Snub-Nosed Monkeys (Rhinopithecus roxellana).

Project description:Diarrhea is often associated with marked alterations in the intestinal microbiota, termed dysbiosis; however, limited information is currently available on the intestinal microbiota in captive golden snub-nosed monkeys (Rhinopithecus roxellana) with diarrhea. We herein characterized the fecal microbiota in diarrhea and healthy monkeys using the Illumina MiSeq platform. The concentrations of fecal short-chain fatty acids (SCFAs) and copy numbers of virulence factor genes were also assessed using gas chromatography and quantitative PCR (qPCR), respectively. The results obtained showed that diarrhea monkeys harbored a distinctive microbiota from that of healthy monkeys and had 45% fewer Bacteroidetes. Among healthy subjects, old monkeys had the lowest relative abundance of Bacteroidetes. Linear discriminant analysis coupled with the effect size (LEfSe) and canonical correlation analysis (CCA) identified significant differences in microbial taxa between diarrhea and healthy monkeys. A PICRUSt analysis revealed that several pathogenic genes were enriched in diarrhea monkeys, while glycan metabolism genes were overrepresented in healthy monkeys. A positive correlation was observed between the abundance of nutrition metabolism-related genes and the individual digestive capacities of healthy monkeys. Consequently, the abundance of genes encoding heat stable enterotoxin was significantly higher in diarrhea monkeys than in healthy monkeys (P<0.05). In healthy subjects, adult monkeys had significant higher concentrations of butyrate and total SCFAs than old monkeys (P<0.05). In conclusion, the present study demonstrated that diarrhea had a microbial component and changes in the microbial structure were accompanied by altered systemic metabolic states. These results suggest that pathogens and malabsorption are the two main causes of diarrhea, which are closely related to the microbial structure and functions.

| S-EPMC6167115 | biostudies-literature

MHC-Based Mate Choice in Wild Golden Snub-Nosed Monkeys.

Project description:The genes of the major histocompatibility complex (MHC) are an important component of the vertebrate immune system and play a significant role in mate choice in many species. However, it remains unclear whether female mate choice in non-human primates is based on specific functional genes and/or genome-wide genes. The golden snub-nosed monkey (Rhinopithecus roxellana) lives in a multilevel society, which consists of several polygynous one-male-several-female units. Although adult females tend to mainly socialize with one adult male, females often initiate extra-pair copulations with other males resulting in a high proportion of offspring being fathered by extra-pair males. We investigated the effects of adaptive MHC genes and neutral microsatellites on female mate choice in a wild R. roxellana population. We sequenced 54 parent-offspring triads using two MHC class II loci (Rhro-DQA1 and Rhro-DQB1) and 20 microsatellites from 3 years of data. We found that the paternities of offspring were non-randomly associated with male MHC compositions not microsatellite genotypes. Our study showed that the fathers of all infants had significantly less variance for several estimates of genetic similarity to the mothers compared with random males at both MHC loci. Additionally, the MHC diversity of these fathers was significantly higher than random males. We also found support for choice based on specific alleles; compared with random males, Rhro-DQA1∗ 05 and Rhro-DQB1∗ 08 were more common in both the OMU (one-male unit) males and the genetic fathers of offspring. This study provides new evidence for female mate choice for MHC-intermediate dissimilarity (rather than maximal MHC dissimilarity) and highlights the importance of incorporating multiple MHC loci and social structure into studies of MHC-based mate choice in non-human primates.

| S-EPMC7779673 | biostudies-literature

Sichuan takin

Project description:Sichuan takin Metagenome

| PRJNA421859 | ENA