Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Cymbidium plastid genome

PROVIDER: PRJNA412593 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6117754_1.fastq.gz	Fastqsanger.gz
	SRR6117754_2.fastq.gz	Fastqsanger.gz
	SRR6117755_1.fastq.gz	Fastqsanger.gz
	SRR6117755_2.fastq.gz	Fastqsanger.gz
	SRR6117756_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

cymbidium sinense flower development proteome

Project description:cymbidium sinense flower development proteome,S0-S5

2024-05-22 | PXD051591 | Pride

Impaired chloroplast biogenesis causes color variation between two varieties/cultivars of Chinese orchid (Cymbidium longibracteatum)

Project description:To explore the mechanisms governing the leaf color variations in Chinese orchids, we analyzed gene expression differences between a wild-type and an albino-type cultivar of Cymbidium longibracteatum

2018-04-03 | GSE100180 | GEO

Bioinformatics approaches for viral metagenomics in plants using short RNAs : model case of study and application to a Cicer arietinum population

Project description:Size fractionated small RNA from total RNA extracts of Cicer arietinum leaves and from Nicotiana benthamiana infected by Cymbidium ringspot virus were mixed in a ratio of 1000 to 1 in amount, respectively. The RNA was ligated to adapters, purified again and reverse transcribed. After PCR amplification the sample was subjected to Illumina high throughput pyrosequencing. The kit used is TrueSeq Small RNA kit Please see www.illumina.com for details of the sequencing technology.

2015-01-30 | GSE63378 | GEO

Impacts of phosphatidylglycerol on plastid gene expression and light induction of nuclear photosynthetic genes

Project description:We report that phosphatidylglycerol (PG) biosynthesis in plastid is required for plastid gene expression mediated by plastid-encoded RNA polymerase and light-induced expression of nuclear-encoded photosynthesis-associated genes. A transcription factor GOLDEN-LIKE1 was also found to be involved in the downregulation of nuclear photosynthesis genes in responce to PG deficiency.

2022-07-15 | GSE180205 | GEO

The Plastid Proteome of the Nonphotosynthetic Chlorophycean Alga Polytomella parva

Project description:The unicellular, free-living, nonphotosynthetic chlorophycean alga Polytomella parva, closely related to Chlamydomonas reinhardtii and Volvox carteri, contains colorless, starch-storing plastids. The P. parva plastids lack all light-dependent processes but maintain crucial metabolic pathways. The colorless alga also lacks a plastid genome, meaning no transcription or translation should occur inside the organelle. Here, using an algal fraction enriched in plastids as well as publicly available transcriptome data, we provide a proteomic characterization of the P. parva plastid, ultimately identifying several plastid proteins, both by mass spectrometry and bioinformatic analyses. Altogether these results led us to propose a plastid proteome for P. parva, i.e., a set of proteins that participate in carbohydrate metabolism; in the synthesis and degradation of starch, amino acids and lipids; in the biosynthesis of terpenoids and tetrapyrroles; in solute transport and protein translocation; and in redox homeostasis. This is the first detailed plastid proteome from a unicellular, free-living colorless alga.

2020-12-10 | PXD022051 | Pride

Genome-wide binding patterns of the Plastid-encoded polymerase in Arabidopsis

Project description:Plastids are endosymbiotic organelles containing their own genomes, which are transcribed by two types of RNA polymerases. One of those enzymes is a bacterial-type, multi-subunit polymerase encoded by the plastid genome. The plastid-encoded polymerase (PEP) is required for efficient expression of genes encoding proteins involved in photosynthesis. Despite the importance of PEP, its DNA binding locations have not been studied on the genome-wide scale at high resolution. We established a highly specific approach to detect the genome-wide pattern of PEP binding to chloroplasts DNA using ptChIP-seq. We found that in mature Arabidopsis thaliana chloroplasts, PEP has a complex pattern of binding to DNA with preferential association at genes encoding rRNA, tRNA and a subset of photosynthetic proteins. Sigma factors SIG2 and SIG6 strongly impact PEP binding to a subset of tRNA genes and have more moderate effects on PEP binding throughout the rest of the genome. PEP binding is commonly enriched on gene promoters, around transcription start sites. Finally, the levels of PEP binding to DNA are correlated with the levels of RNA accumulation, which allowed estimating the quantitative contribution of transcription to RNA accumulation.

2022-01-21 | GSE192568 | GEO

Cymbidium macrorhizon

Project description:Cymbidium macrorhizon Genome sequencing

| PRJNA378466 | ENA

Cymbidium tracyanum

Project description:Cymbidium tracyanum Genome sequencing

| PRJNA1145103 | ENA

Cymbidium mannii

Project description:Genome of Cymbidium mannii

| PRJNA1057846 | ENA

Project description:Plastid genome sequencing

| PRJNA1263568 | ENA