Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Drosophila melanogaster

ABSTRACT: analysis of allelic imbalance in Drosophila melanogaster F1 hybrids

PROVIDER: PRJNA41715 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR031604.fastq.gz	Fastqsanger.gz
	SRR031605.fastq.gz	Fastqsanger.gz
	SRR031606.fastq.gz	Fastqsanger.gz
	SRR031607.fastq.gz	Fastqsanger.gz
	SRR031608.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Cis regulatory effects on A-to-I RNA editing in Drosophila melanogaster, Drosophila sechellia and their F1 hybrids

Project description:We applied microfluidic multiplex PCR and deep sequencing (mmPCR-seq) to quantify RNA editing levels at targeted sites in Drosophila melanogaster, Drosophila sechellia and the species-specific alleles of their F1 hybrids to understand the contribution of cis and trans regulatory factors to regulating RNA editing levels.

2015-03-25 | GSE67236 | GEO

Natural variation affecting allele-specific expression in the Malpighian tubules of Drosophila melanogaster

Project description:We used RNA-seq to investigate natural variation in gene expression in the Malpighian tubules of three inbred Drosophila melanogaster strains and their F1 hybrids. One of the strains was from a population in the species’ ancestral range (Zambia), while the other two were from a more recently derived population (Sweden).

2018-08-29 | GSE103645 | GEO

Drosophila melanogaster x Drosophila simulans

Project description:Allelic imbalance in Drosophila hybrid heads: exons, isoforms and evolution.

| PRJNA150499 | ENA

Regulatory Divergence in Drosophila revealed by mRNA-seq (trans-splicing)

2010-07-20 | GSE22588 | GEO

DRIP-seq, Drosophila melanogaster, OregonR 2-6H and 10-14H embryos and S2 cells

Project description:This study idenfied RNA:DNA hybrids in Drosophila melanogaster embryos and S2 cells

2020-02-03 | GSE127329 | GEO

Proteomic Analysis of Drosophila melanogaster mtx2 (Ortholog of CG8004) Mutants

Project description:Proteomic Analysis (MS/MS) of Drosophila melanogaster mtx2 (Ortholog of CG8004) Heterozygous versus Homozygous Mutants at 2 Days Post-Pupa Formation

2025-04-07 | PXD062657 |

Regulatory Divergence in Drosophila revealed by mRNA-seq (trans-splicing)

Project description:Deep Sequencing of mRNA from Drosophila melanogaster, Drosophila Sechellia, and their F1 hybrid. These data were generated in a study to analyze the extent and specificity of trans-splicing in Drosophila. mRNA-seq libraies were prepared from poly(A)+ RNA prepared from whole F1 hybrids of D. melanogaster and D. sechellia (female 0-3d post eclosion). Separate control libraries were prepared from D. melanogaster and D. sechellia total RNA (mixed before library preparation). The results of this study identified 80 novel trans-splicing events between homologous alleles of the same gene. Keywords: RNA-Seq Keywords: Expression profiling by high throughput sequencing There were 2 total samples in this study. Paired-end mRNA-seq was used to survey trans-splicing in F1 hybrids of D. melanogaster and D. sechellia. A mixed "control" library was used to assess the frequency of false-positive trans-splicing signal resulting from errors in reference genomes, high-throughput sequencing, and RT-PCR amplification based strand-switching.

2010-07-19 | E-GEOD-22588 | biostudies-arrayexpress

Developmental time-course study of Drosophila melanogaster, D. sechellia, D. simulans, and D. sim x D.s sec hybrids

Project description:In order to test the hypothesis that adult hybrid misexpression results from the cascading effect of earlier-expressed developmentally important improperly regulated genes, as well as address whether Von Baer’s 3rd law (suggesting that earlier stages of development should be more similar between species than later stages) holds at the level of gene expression, we conducted whole-transcriptome Drosophila melanogaster cDNA microarray-based expression profiling of males of D. melanogaster, D. sechellia, and D. simulans, at four synchronized developmental time-points (3rd instar larval [larval], early pupal, late pupal, and newly-emerged adult [adult]). D. simulans and D. sechellia shared a most recent common ancestor (MRCA) ~0.5 to 1.0 million years ago (MYA) and form a clade that shared an MRCA with D. melanogaster approximately 5.4 MYA. In addition, we also performed the same analysis on the male interspecific F1 hybrids of the D. simulans (♀) × D. sechellia (♂) cross.

2010-08-03 | GSE17535 | GEO

Drosophila melanogaster

Project description:Drosophila melanogaster

| PRJNA448445 | ENA

Drosophila melanogaster

Project description:Drosophila melanogaster

| PRJNA868356 | ENA