Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Thymus vulgaris

ABSTRACT: Thymus vulgaris Transcriptomes (from study on cytoplasmic male sterility)

PROVIDER: PRJNA417241 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6262800_1.fastq.gz	Fastqsanger.gz
	SRR6262800_2.fastq.gz	Fastqsanger.gz
	SRR6262810_1.fastq.gz	Fastqsanger.gz
	SRR6262810_2.fastq.gz	Fastqsanger.gz
	SRR6262801_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Thymus vulgaris

Project description:Thymus vulgaris

| PRJNA1211548 | ENA

Thymus vulgaris

Project description:Thymus vulgaris overview

| PRJNA625142 | ENA

Thymus vulgaris

Project description:Whole genome and transcriptome sequencing of Thymus vulgaris

| PRJNA623602 | ENA

Pod development transcriptomes of four Phaseolus vulgaris accesions

Project description:The goal of this study was to detemine the genes responsible of the pod indehiscence in Phaseolus vulgaris by comparing 4 accesions with total, middle and null dehiscence transcriptomes of three stages of pod develoment of Phaseolus vulgaris

2022-04-16 | GSE179985 | GEO

Pyrus

Project description:Cytoplasmic male sterility in Pyrus

| PRJNA928741 | ENA

Transcriptome Sequencing and De Novo Analysis of a Cytoplasmic Male Sterile Line and Its Near-Isogenic Restorer Line in Chili Pepper (Capsicum annuum L.)

Project description:Background: The use of cytoplasmic male sterility (CMS) in F1 hybrid seed production of chili pepper is increasingly popular. However, the molecular mechanisms of cytoplasmic male sterility and fertility restoration remain poorly understood due to limited transcriptomic and genomic data. Therefore, we analyzed the difference between a CMS line 121A and its near-isogenic restorer line 121C in transcriptome level using next generation sequencing technology (NGS), aiming to find out critical genes and pathways associated with the male sterility. Results: We generated approximately 53 million sequencing reads and assembled de novo, yielding 85,144 high quality unigenes with an average length of 643 bp. Among these unigenes, 27,191 were identified as putative homologs of annotated sequences in the public protein databases, 4,326 and 7,061 unigenes were found to be highly abundant in lines 121A and 121C, respectively. Many of the differentially expressed unigenes represent a set of potential candidate genes associated with the formation or abortion of pollen. Conclusions: Our study profiled anther transcriptomes of a chili pepper CMS line and its restorer line. The results shed the lights on the occurrence and recovery of the disturbances in nuclear-mitochondrial interaction and provide clues for further investigations. Anther transcriptomes of a chili pepper CMS line 121A and its nearisogenic restorer line 121C were generated by deep sequencing, using Illumina HiSeq 2000.

2013-07-03 | E-GEOD-45431 | biostudies-arrayexpress

Triticum aestivum

Project description:Study on the Mechanism of Male Sterility in Heterologous Cytoplasmic Wheat

| PRJNA1057433 | ENA

Human Early Postnatal Thymus [ATAC-seq]

Project description:Within the thymus, regulation of the cellular cross-talk directing T cell development is dependent on spatial interactions within specialized niches. To create a holistic, spatially defined map of tissue niches guiding postnatal T cell development we employed the multidimensional imaging platform CO-detection by indEXing (CODEX), as well as Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) and Assay for Transposable-Accessible Chromatin (ATAC-seq). We generated age-matched 4–5-month-old postnatal thymus datasets for both male and female donors, and describe signaling and cell-cell interaction networks in sequential thymocyte developmental niches. Together, these data represent a unique age-matched spatial multiomic resource to investigate how sex-based differences in thymus regulation and T cell development arise, and provide an essential resource to understand the mechanisms underlying immune function and dysfunction in males and females.

2024-08-30 | GSE264585 | GEO

rat thymus proteomics study of FNC 1

Project description:Thymus is the important immune organ, responsible for T cell development and differentiation.We conduct rat thymus proteomics study of FNC.

2024-08-10 | PXD050620 | Pride

Transcriptome Sequencing and De Novo Analysis of a Cytoplasmic Male Sterile Line and Its Near-Isogenic Restorer Line in Chili Pepper (Capsicum annuum L.)

2013-07-03 | GSE45431 | GEO