Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arborophila rufipectus

ABSTRACT: Arborophila rufipectus Genome sequencing

PROVIDER: PRJNA419836 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6375430_1.fastq.gz	Fastqsanger.gz
	SRR6375430_2.fastq.gz	Fastqsanger.gz
	SRR6375431_1.fastq.gz	Fastqsanger.gz
	SRR6375431_2.fastq.gz	Fastqsanger.gz
	SRR6375432_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Arborophila rufipectus

Project description:Arborophila rufipectus

| PRJNA919973 | ENA

Arborophila rufipectus

Project description:Arborophila rufipectus overview

| PRJNA419980 | ENA

Arborophila rufipectus

Project description:Arborophila rufipectus Genome sequencing and assembly

| PRJNA475424 | ENA

Arborophila rufipectus

Project description:Arborophila rufipectus Raw sequence reads

| PRJNA889581 | ENA

Arborophila rufipectus

Project description:Arborophila rufipectus Transcriptome or Gene expression

| PRJNA422498 | ENA

Analysis of microbial diversity in the feces of Arborophila rufipectus

Project description:Introduction Intestinal microbiota composition plays a crucial role in modulating the health of the host. This evaluation indicator is very sensitive and profoundly impacts the protection of endangered species. Currently, information on the gut microbiota of wild birds remains scarce. Therefore, this study aimed to describe the gut microbial community structure and potentially, the pathogen composition of wild Arborophila rufipectus. Methods To guarantee comprehensive data analysis, we collected fecal samples from wild A. rufipectus and Lophura nycthemera in their habitats for two quarters. The 16S rRNA gene was then sequenced using high-throughput sequencing technology to examine the intestinal core microbiota, microbial diversity, and potential pathogens with the aim of determining if the composition of the intestinal microflora varies seasonally. Results and Discussion The gut microbiota of A. rufipectus and L. nycthemera primarily comprised four phyla: Proteobacteria (45.98%), Firmicutes (35.65%), Bacteroidetes (11.77%), and Actinobacteria (3.48%), which accounted for 96.88% of the total microbial composition in all samples. At the genus level, core microorganisms were found, including Shigella (10.38%), Clostridium (6.16%), Pseudomonas (3.03%), and Rickettsiella (1.99%). In these genera, certain microbial species have been shown to be pathogenic. This study provides important indicators for analyzing the health status of A. rufipectus and formulating protective measures.

| S-EPMC9932278 | biostudies-literature

Arborophila ardens

Project description:Arborophila ardens Genome sequencing

| PRJNA422494 | ENA

Spilornis rufipectus

Project description:Spilornis rufipectus

| PRJNA818513 | ENA

Leptopogon rufipectus

Project description:Leptopogon rufipectus

| PRJNA960184 | ENA

Formicarius rufipectus

Project description:Formicarius rufipectus