Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Scincidae

ABSTRACT: Raw sequencing reads from ultraconserved elements of Australasian skinks

PROVIDER: PRJNA420910 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6397160_1.fastq.gz	Fastqsanger.gz
	SRR6397160_2.fastq.gz	Fastqsanger.gz
	SRR6397170_1.fastq.gz	Fastqsanger.gz
	SRR6397170_2.fastq.gz	Fastqsanger.gz
	SRR6397180_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 238

Similar Datasets

Eupholini Curculionidae

Project description:Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils

| PRJNA394929 | ENA

Meliphagidae

Project description:Ultraconserved elements resolve genus-level relationships in a major Australasian bird radiation (Aves: Meliphagidae)

| PRJNA499129 | ENA

Zosteropidae white-eyes

Project description:Ultraconserved elements of Zosteropidae white-eyes. Raw sequence reads

| PRJNA741190 | ENA

Solifugae

Project description:Raw sequenced reads for target enrichment of ultraconserved elements of Solifugae

| PRJNA1052071 | ENA

LC-MS/MS of autotrophic culture KS, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)

Project description:Nitrate-reducing iron(II)-oxidizing bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture KS. Raw sequencing data of 16S rRNA amplicon sequencing, shotgun metagenomics (short reads: Illumina; long reads: Oxford Nanopore Technologies), metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682552. This dataset contains proteomics data for 2 conditions (heterotrophic and autotrophic growth conditions) in triplicates.

2021-05-17 | PXD023186 | Pride

Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved sequence elements

Project description:The manuscript by D. Licastro and colleagues “Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved sequence elements” presents an overview of experimental and computational approaches employed by the authors to perform a multi-facet characterization of ultraconserved elements (UCEs). The authors present an interesting analysis where they investigate the transcription of UCEs in mouse development at different stages by conductin an microarray experiment. Some of these results are further verified by RT-PCR. 12 Samples, 4 groups 3 samples per group.

2010-06-16 | E-GEOD-19371 | biostudies-arrayexpress

Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved sequence elements

2010-06-16 | GSE19371 | GEO

Project description:Ultraconserved elements for parachuting Geckos

| PRJNA594237 | ENA

Project description:Ultraconserved Elements of Synallaxis rutilans

| PRJNA758374 | ENA

Project description:Ultraconserved Elements of Butorides Herons

| PRJNA1295955 | ENA