Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Porifera

ABSTRACT: Sponge microbiome stability

PROVIDER: PRJNA432116 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6660540_1.fastq.gz	Fastqsanger.gz
	SRR6660540_2.fastq.gz	Fastqsanger.gz
	SRR6660550_1.fastq.gz	Fastqsanger.gz
	SRR6660550_2.fastq.gz	Fastqsanger.gz
	SRR6660560_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 216

Similar Datasets

Porifera

Project description:Meta-transcriptomic response of two sponge holobionts after exposure to coral and macroalgal exudates

| PRJNA839199 | ENA

Porifera (sponge microbiome)

Project description:Cold adaptation and horizontal gene transfer in Antarctic sponge and seawater microbiomes

| PRJNA1263899 | ENA

Zhang 2024 - Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont

Project description:We developed eight Genome-scale Metabolic Models for the microbiome of the sponge Stylissa sp. We also modelled metabolic interactions within the network of the eight-species microbiome by introducing different nutrients (such as HT, laurate, and a combination of both).

2024-11-13 | MODEL2407300002 | BioModels

Sponges (Porifera) and Environmental control

Project description:Effect of suspended sediments on the sponge holobiont

| PRJNA330753 | ENA

Sponges (Porifera) and Environmental control

Project description:Effect of sediment smothering on the sponge holobiont

| PRJNA330754 | ENA

Complete metabolic reconstruction of the microbiome of the model sponge Ianthella basta

Project description:Marine sponges are essential for coral reefs to thrive and harbour a diverse microbiome that is thought to contribute to host health. Although the overall function of sponge symbionts has been increasingly described, in-depth characterisation of each taxa remains challenging, with many sponge species hosting up to 3,000 distinct microbial species. Recently, the sponge Ianthella basta has emerged as a model organism for symbiosis research, hosting only three dominant symbionts: a Thaumarchaeotum, a Gammaproteobacterium, and an Alphaproteobacterium and a range of other minor taxa. Here, we retrieved metagenome assembled genomes (MAGs) for >90% of I. basta’s microbial community which allowed us to make a complete metabolic reconstruction of the sponge’s microbiome, identifying metabolic complementarity between microbes, as well as the importance of symbionts present in low abundance. We also mined the metagenomes for putative viral sequences, highlighting the contribution of viruses to the overall metabolism of the sponge, and complement this data with metaproteomic sequencing to identify active metabolic pathways in both prokaryotes and viruses. This data now allows us to use I. basta as a model organism for studying host-microbe interactions and provides a basis for future (genomic) manipulative experiments.

2023-02-24 | PXD032278 | Pride

Project description:Sponge-symbiont stability in spite of antibiotic-induced microbiome disturbance

| PRJNA786895 | ENA

Project description:Sponge Microbiome

| PRJNA699379 | ENA

Porifera

Project description:18S metagenome of sponges in Lake Baikal

| PRJNA318719 | ENA

Porifera

Project description:Porifera Metagenome

| PRJNA318656 | ENA