Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Zostera marina cultivar:BBMb2007

ABSTRACT: Zostera marina BBMb2007 Resequencing

PROVIDER: PRJNA463007 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8948570_1.fastq.gz	Fastqsanger.gz
	SRR8948570_2.fastq.gz	Fastqsanger.gz
	SRR8948569_1.fastq.gz	Fastqsanger.gz
	SRR8948569_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

The genome of the seagrass Zostera marina

Project description:This dataset contains the transcriptome sequence of Zostera marina as produced by Illumina sequencing. Four tissues were sequenced, female flower in late and early stages of development, the male flower, the root and leaf tissue.

2016-01-16 | GSE67579 | GEO

The genome of the seagrass Zostera marina

2016-01-16 | E-GEOD-67579 | biostudies-arrayexpress

High-throughput sequencing of small RNAs in Zostera marina

Project description:Small RNAs (21-24 nt) are pivotal regulators of gene expression that guide both transcriptional and post-transcriptional silencing mechanisms in diverse eukaryotes, including most if not all plants. MicroRNAs (miRNAs) and short interfering RNAs (siRNAs) are the two major types, both of which have a demonstrated and important role in plant development, stress responses and pathogen resistance. In this work, we used a deep sequencing approach (Sequencing-By-Synthesis, or SBS) to develop sequence resources of small RNAs from Zostera marina tissues (including leaves, flowers, roots and rhizoids). The high depth of the resulting datasets enabled us to examine in detail critical small RNA features as size distribution, tissue-specific regulation and sequence conservation between different organs in this species. We also developed database resources and a dedicated website (http://smallrna.udel.edu/) with computational tools for allowing other users to identify new miRNAs or siRNAs involved in specific regulatory pathways, verify the degree of conservation of these sequences in other plant species and map small RNAs on genes or larger regions of the genome under study.

2011-09-30 | GSE32480 | GEO

Zostera marina cultivar:ALI316

Project description:Zostera marina ALI316 Resequencing

| PRJNA462971 | ENA

Zostera marina cultivar:ASL7

Project description:Zostera marina ASL7 Resequencing

| PRJNA462976 | ENA

Zostera marina cultivar:ASL9

Project description:Zostera marina ASL9 Resequencing

| PRJNA462978 | ENA

Zostera marina cultivar:BB508

Project description:Zostera marina BB508 Resequencing