Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Powellomyces hirtus

ABSTRACT: Powellomyces hirtus overview

PROVIDER: PRJNA464120 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR7517562_subreads.fastq.gz	Fastqsanger.gz
	SRR7517563_subreads.fastq.gz	Fastqsanger.gz
	SRR7517564_subreads.fastq.gz	Fastqsanger.gz
	SRR7517594_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Ptomaphagus hirtus

Project description:Ptomaphagus hirtus overview

| PRJNA155413 | ENA

Hemicrepidius hirtus

Project description:Hemicrepidius hirtus overview

| PRJNA1256592 | ENA

Evolutionary conservation of phototransduction and clock gene expression in the cave beetle Ptomaphagus hirtus (Coleoptera, Leiodidae)

Project description:Caves are populated with a diverse fauna of highly adapted species that tend to exhibit a consistent suite of both regressive and constructive trait modifications. Because molecular studies of cave adaptation have largely concentrated on vertebrate models, our ability to recognize universalities in the genetic trajectories underlying cave adaptation remains limited. We have initiated efforts to elucidate the molecular evolution of the flightless small carrion beetle Ptomaphagus hirtus (Ptomaphagus hirtus), which represents one of the highly endemic signature inhabitants of the Mammoth Cave system of Kentucky. Ptomaphagus hirtus has been considered blind despite the presence of lateral eye rudiments. However, analysis of the Ptomaphagus hirtus adult head transcriptome by deep RNA sequencing reveals the conservation and expression of all essential insect phototransduction genes including a single long wavelength-sensitive opsin. Consistent with the preservation of visual ability, Ptomaphagus hirtus expresses all core members of the clock gene network and exhibits a similar degree of negative phototaxis as does a closely related flight-active species in light-dark choice assays. The structural reduction of the peripheral Ptomaphagus hirtus visual system is reflected by the lack of five eye pigmentation specific genes in the head transcriptome. Taken together our data suggest that wavelength contingent and probably also spatial vision have been lost in Ptomaphagus hirtus, while irradiance vision and contingent behavioral modules have remained preserved. We predict that the adaptive state of Ptomaphagus hirtus is representative for a large number of microphthalmic species adapted to the twilight zone of caves and other subterranean habitats

2011-03-19 | GSE28039 | GEO

Evolutionary conservation of phototransduction and clock gene expression in the cave beetle Ptomaphagus hirtus (Coleoptera, Leiodidae)

2011-03-19 | E-GEOD-28039 | biostudies-arrayexpress

Phrixothrix hirtus

Project description:Phrixothrix hirtus Genome sequencing and assembly

| PRJNA741915 | ENA

Powellomyces hirtus strain:BR81

Project description:Powellomyces hirtus BR81 Transcriptome - BR81R

| PRJNA462539 | ENA

Powellomyces hirtus strain:BR81

Project description:Powellomyces hirtus BR81 Standard Draft genome sequencing

| PRJNA460973 | ENA

Powellomyces hirtus strain:CBS 809.83

Project description:Powellomyces hirtus CBS809.83 genome sequencing and assembly

| PRJNA453744 | ENA

Ptomaphagus hirtus

Project description:Evolutionary conservation of phototransduction and clock gene expression in the cave beetle Ptomaphagus hirtus (Coleoptera, Leiodidae)

| PRJNA137949 | ENA

icHemHirt

Project description:Hemicrepidius hirtus

| PRJEB61499 | ENA