Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome-wide survey of Caribbean Acroporids

PROVIDER: PRJNA473816 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR12363322_1.fastq.gz	Fastqsanger.gz
	SRR12363322_2.fastq.gz	Fastqsanger.gz
	SRR12363323_1.fastq.gz	Fastqsanger.gz
	SRR12363323_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 162

Similar Datasets

Analysis of Whole Genome Sequence and Genome-wide SNPs in Highly Inbred Pigs [Array]

Project description:We conducted a genome wide survey of single nucleotide polymorphisms (SNPs) using the porcine 60 K SNP chips on inbred pigs

2020-12-31 | GSE157934 | GEO

Homo sapiens

Project description:Genome-wide survey of large rare copy number variations in Alzheimer’s disease among Caribbean Hispanics

| PRJNA148797 | ENA

Genome-wide survey of transcriptional differences between males and females of Tribolium castaneum, the red flour beetle

Project description:Genome-wide survey of transcriptional differences between males and females of Tribolium castaneum, the red flour beetle

2010-05-27 | GSE18087 | GEO

Gene expression profiles in comorbid PTSD and depression

Project description:This is a genome-wide differential gene expression survey of cases of comorbid PTSD and depression versus controls

2015-12-01 | GSE67663 | GEO

Genome-wide transcriptome analysis of SSCs, iGSCs and FGSCs

Project description:We use RNA-seq to report the most comprehensive survey to date of Genome-wide transcriptome in germline stem cells

2021-10-06 | GSE134640 | GEO

Genome-wide DNA methylation analysis in SSCs, iGSCs, and FGSCs

Project description:We use MeDIP-seq to report the most comprehensive survey to date of genome-wide DNA methylation in germline stem cells

2021-10-06 | GSE134727 | GEO

Genome-wide survey of large rare copy number variations in Alzheimer’s disease among Caribbean Hispanics

Project description:Recently genome-wide association studies have identified significant association between Alzheimer’s disease and variations in CLU, PICALM, BIN1, CR1, MS4A4/MS4A6E, CD2AP, CD33, EPHA1 and ABCA7. However, the pathogenic variants in these loci have not yet been found. We conducted a genome-wide scan for large copy number variations (CNVs) in a dataset of Caribbean Hispanic origin (554 controls and 559 cases with late-onset Alzheimer’s disease) that was previously investigated in a SNP-based genome-wide association study using Illumina HumanHap 650Y platform. We ran four CNV calling algorithms and analyzed rare large CNVs (>100 Kb) to obtain high-confidence calls that were detected by at least two algorithms. In total, 734 such CNVs were observed in our dataset. Global burden analyses did not reveal significant differences between cases and controls in CNV rate, distribution of deletions or duplications, total or average CNV size; and number of genes affected by CNVs. However, we observed a nominal association between Alzheimer’s disease and a ~470 Kb duplication on chromosome15q11.2 (P=0.037). This duplication, encompassing up to five genes (TUBGCP5, CYFIP1, NIPA2, NIPA1 and WHAMML1) was present in 10 cases (2.6%) and 3 controls (0.8%). The dosage increase of CYFIP1 and NIPA1 genes was further confirmed by quantitative PCR. The current study did not detect CNVs (including common CNVs) that affect novel Alzheimer’s disease loci reported by large genome-wide association studies. However, since the array technology used in our study has limitations in detecting small CNVs, future studies must carefully assess novel AD associated genes for the presence of disease related CNVs. Case-control analysis, screening of large copy number variation in 559 Alzheimer cases and 554 control subjects of Caribbean Hispanic ancestry

2012-04-30 | E-GEOD-33528 | biostudies-arrayexpress

Microarray studies of darkness stress and bleaching in the Caribbean corals Acropora palmata and Montastraea

Project description:This SuperSeries is composed of the following subset Series: GSE27022: Microarray studies of darkness stress and bleaching in the Caribbean coral Acropora palmata GSE27024: Microarray studies of darkness stress and bleaching in the Caribbean coral Montastraea faveolata Refer to individual Series

2011-03-22 | E-GEOD-27025 | biostudies-arrayexpress

HSV1 ICP0 associated ubiquitination modulation in N2A neuron cells

Project description:Proteome-wide survey of ubiquitination modulation in N2A neuron cells in response to HSV1 ICP0 transfection and HSV1 infection

2021-01-17 | PXD019782 |

RNA-seq of Human neural progenitor cells exposed to lead (Pb) reveals transcriptome dynamics, splicing alterations and Pb disease risk associations

Project description:We use time series RNA-seq to conduct a genome-wide survey of the temporal transcriptome response of human embryonic stem (ES) cell-derived neural progenitor cells (NPCs) exposed to lead.

2017-12-31 | GSE84712 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data