Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arsenic contaminated groundwater

ABSTRACT: Arsenic contaminated groundwater Raw sequence reads

PROVIDER: PRJNA481093 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11462374.fastq.gz	Fastqsanger.gz
	SRR11463299.fastq.gz	Fastqsanger.gz
	SRR7537707.fastq.gz	Fastqsanger.gz
	SRR8148966.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Arsenic-contaminated soil metagenome

Project description:Arsenic-contaminated soil metagenome Raw sequence reads

| PRJNA1255126 | ENA

groundwater metagenome

Project description:Arsenic contaminated groundwater Raw sequence reads

| PRJNA291121 | ENA

Arsenic contaminated soil

Project description:Bacterial community in arsenic contaminated soil

| PRJNA432647 | ENA

Italian groundwaters contaminated with arsenic

Project description:Microbial arsenic cycling in Italian contaminated groundwaters

| PRJNA507727 | ENA

antimony and arsenic co-contaminated river sedimentary microbial community in an antimony-contaminated river

Project description:antimony and arsenic co-contaminated river sedimentary microbial community in an antimony-contaminated river Raw sequence reads

| PRJNA554201 | ENA

Experimental validation of HiSpOD probe design with complex background mRNA or 3 known antiense RNA and expression analysis on a contaminated groundwater sample

Project description:HiSpOD is a new efficient functional microarrays probe design algorithm especially dedicated for the microbial ecology and environmental studies. It was used to design 3392 probes targeting 21 genes involved in chlorinated solvent biodegradation pathways and synthesized on a nimblegen microarray. In order to test the probe specificity, the microarray was firstly hybridized to 6 M-BM-5g of labelled aRNA from sheep rumen content (background aRNA). Secondly, hybridization of 1011 copies of labelled aRNA derived from in vitro transcription of three synthetic genes (mmoC, vcrA and tceA) and mixed with 6 M-BM-5g of the same complex background material were performed to test their sensibility. Finally, the expression analysis of a contaminated groundwater sample was performed. A 3 chip study was realized. The first one is a negative control performed with a complex background material (labelled antisense mRNA from sheep rumen content). The second one is a positive control realized with labelled antisense RNA derived from in vitro transcription of three synthetic genes mixed the same complex background material. The third consists in the hybridization of antisense mRNA retrieved from a contaminated groundwater. Each probe (3392) was synthetized in triplicate, and a total of 8,863 random probes was used to determine the background noise.

2011-04-13 | E-GEOD-21492 | biostudies-arrayexpress

Reproductive biomarker response to PFAS-contaminated groundwater [liver]

Project description:The use of aqueous film-forming foams (AFFF) at fire-training areas (FTAs) has introduced into ground- and surface waters a complex mixture of per- and poly-fluorinated alkyl substances (PFAS). The toxicity of environmental PFAS mixtures to wildlife is not well understood and presents a knowledge gap that limits accurate risk assessment. To evaluate reproductive biomarker responses to complex environmental PFAS mixtures, we conducted a series of on-site experiments using flow-through mobile laboratories exposing fish to groundwater impacted by a legacy FTA and an adjacent reference site A 60K fathead minnow microarray was used to quantify gene expression patterns in the testis and liver of fish exposed to water from Fire Training Area 1 and 2 relative to a reference site.

2024-08-31 | GSE261669 | GEO

Reproductive biomarker response to PFAS-contaminated groundwater [testis]

2024-08-31 | GSE261668 | GEO

Experimental validation of HiSpOD probe design with complex background mRNA or 3 known antiense RNA and expression analysis on a contaminated groundwater sample

2011-04-13 | GSE21492 | GEO

Whole genome transcriptional analysis in rice-stem during dough stage induced by arsenic contaminated soil and irrigation water

Project description:RNA from stem containing first node and internodes during dough stage was considered for the above purpose. Satabdi, (popularly known as Minikit) most popular cultivar of West Bengal and Palman, another high yielding variety were considered for microarray analysis for comparison to each other. Two rice genotypes were grown in identical conditions (same field with contaminated ground water) to obtain the most meaningful conclusion. Dough stage was considered as variation in arsenic accumulation among the genotypes starts during dough stage to maturity. Plant tissues were collected from stem for transcriptomic analysis as expression profiling of such tissue in response to arsenic would be most useful as arsenic transport/loading in grain was assumed to be controlled by arsenic translocation behavior at inter vascular level or from xylem to phloem. Satabdi accumulates more than twice of arsenic in brown rice (0.346 mg/kg) than that of Palman (0.156 mg/kg) whereas accumulation in straw (2.07 mg/kg) was approximately less than half of the Palman (4.491 mg/kg)

2014-01-17 | E-MTAB-2106 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data