Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Halocynthia roretzi genome sequencing

PROVIDER: PRJNA482961 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR7601940_1.fastq.gz	Fastqsanger.gz
	SRR7601940_2.fastq.gz	Fastqsanger.gz
	SRR7601941.fastq.gz	Fastqsanger.gz
	SRR7601942.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Halocynthia roretzi

Project description:Halocynthia roretzi overview

| PRJNA82135 | ENA

Project description:Halocynthia roretzi gut transcriptome

| PRJNA596866 | ENA

Project description:Halocynthia roretzi stool metagenome

| PRJNA596907 | ENA

Spatio-temporal transcriptome maps in the early embryos of Halocynthia roretzi

Project description:The ascidia Halocynthia roretzi (Phylum: Chordata, Subphylum: Tunicata, Class: Ascidiacea) have been used as model species in development biology for over a century. It offers attractive experimental features, including a compact genome, invariant embryonic cell lineages, small embryonic cell number, and translucent embryos, which allow the description of developmental processes with a cellular level of resolution. Staged RNA-seq data has been already deposited in DDBJ (accessiton number DRA005714 and DRA005711). In the present study, we sequenced genome of H. roretzi of a southwestern Japanese population using RNA-Seq data. These RNA-Seq data covers expressions in 8 cell and 110 cell embryos of Animal(A), Vegetal(V) and whole-embryo regions. These genome assembly, transcript assembly, and transcript models are incorporated into the ANISEED (https://www.aniseed.cnrs.fr/) for genome browsing and blast searches. The genome and transcriptome resources will be useful datasets for developmental biology, evolutionary biology and molecular ecology using this model organism.

2024-03-16 | GSE195613 | GEO

Project description:Halocynthia roretzi stool 16s rRNA sequencing

| PRJNA596895 | ENA

Halocynthia roretzi

Project description:Halocynthia roretzi high-throughput sequencing data

| PRJNA957224 | ENA

Halocynthia roretzi strain:Type C

Project description:Halocynthia roretzi strain:Type C Genome sequencing and assembly

| PRJNA481447 | ENA

Halocynthia roretzi

Project description:Dynamics of gene expression across the embryonic development of Halocynthia roretzi

| PRJNA418107 | ENA

Spatio-temporal transcriptome maps in the early embryos of Halocynthia roretzi

Project description:Spatio-temporal transcriptome maps in the early embryos of Halocynthia roretzi

| PRJNA801486 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data