Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Wood decay metagenome

ABSTRACT: Bacteria from Aquilaria sinensis

PROVIDER: PRJNA509099 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8297892.fastq.gz	Fastqsanger.gz
	SRR8297893.fastq.gz	Fastqsanger.gz
	SRR8297894.fastq.gz	Fastqsanger.gz
	SRR8297895.fastq.gz	Fastqsanger.gz
	SRR8297896.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

wood decay metagenome

Project description:Identification of diverse bacteria in decaying wood in nature

| PRJDB10410 | ENA

wood decay metagenome

Project description:1) Aquatic 2) Marine 3) Submerged Wood 4) Fungi 5) Bacteria 6) Archaea Targeted loci

| PRJNA328472 | ENA

Identification of genes related to agarwood formation: transcriptome analysis of healthy and wounded tissues of Aquilaria sinensis

Project description:Agarwood is an expensive resinous heartwood derived from the wounded Aquilaria plants. To identify the primary genes that maybe related to agarwood formation, we sequenced 2 cDNA libraries generated from healthy and wounded A. sinensis (Lour.) Gilg. A total of 89,137 unigenes with an average length of 678.65 bp were obtained, and they were annotated in detail at bioinformatics levels. Of those associated with agarwood formation, 30 putatively encoded enzymes in the sesquiterpene biosynthesis pathway, a handful of transcription factors, and protein kinases related to wound signal transduction. Three full-length cDNAs of sesquiterpene synthases (ASS1-3) were cloned and expressed in Escherichia coli, and enzyme assays revealed that they are active enzymes, with the major products being M-NM-4-guaiene. A methyl jasmonate (MJ) induction experiment revealed that the expression of ASS was significantly induced by MJ, and the production of sesquiterpenes was elevated accordingly. The expression of some transcription factors and protein kinases, especially MYB4, WRKY4, MPKK2 and MAPK2, was also induced by MJ and coordinated with ASS expression, suggesting they maybe positive regulators of ASS. This study provides extensive transcriptome information for Aquilaria spp. and valuable clues for elucidating the mechanism of wound-induced agarwood sesquiterpenes biosynthesis and their regulation. healthy and wounded stems of three-year-old A. sinensis trees

2013-12-31 | E-GEOD-42246 | biostudies-arrayexpress

Wood decay metagenome

Project description:Wood decay metagenome Metagenome

| PRJNA550260 | ENA

wood decay metagenome

Project description:Relationships among wood-boring beetles, fungal endophytes and saprotrophs, and the decomposition of forest biomass

| PRJNA575777 | ENA

wood decay metagenome

Project description:Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEFlog1-2N pilot

| PRJNA466869 | ENA

wood decay metagenome

Project description:Driftwood fungi Targeted Locus (Loci)

| PRJNA299089 | ENA

wood decay metagenome

Project description:Woody debris microbial communities from Bitterroot National Forest, Montana, USA - Wood TC-2 iTags targeted loci environmental

| PRJNA978195 | ENA

wood decay metagenome

Project description:Investigation of the route of infection of Serpula himantioides causing butt rot

| PRJDB12559 | ENA

wood decay metagenome

Project description:Metagenomic and metatranscriptomic profiling of deadwood associated microbial community

| PRJNA603240 | ENA