Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Differences in circadian rhythms in fly at different temperatures

ABSTRACT: Differences in circadian rhythms in fly at different temperatures

PROVIDER: PRJNA510820 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8354820.fastq.gz	Fastqsanger.gz
	SRR8354830_1.fastq.gz	Fastqsanger.gz
	SRR8354830_2.fastq.gz	Fastqsanger.gz
	SRR8356420.fastq.gz	Fastqsanger.gz
	SRR8356440_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 155

Similar Datasets

RNA seq from fly heads at different temperatures and circadian timepoints [independent replicate 3]

Project description:The goal of this set of experiments is to determine the differences in circadian rhythms in fly at different temperatures.

2019-12-03 | GSE124200 | GEO

RNA seq from fly heads at different temperatures and circadian timepoints [independent replicate 2]

Project description:The goal of this set of experiments is to determine the differences in circadian rhythms in fly at different temperatures.

2019-12-03 | GSE124141 | GEO

RNA seq from fly heads at different temperatures and circadian timepoints [independent replicate 1]

Project description:The goal of this set of experiments is to determine the differences in circadian rhythms in fly at different temperatures

2019-12-03 | GSE124135 | GEO

Small RNA seq from Ago1-IP of fly heads at different temperatures and circadian timepoints

Project description:The goal of this set of experiments is to determine the differences in circadian rhythms in fly at different temperatures

2019-12-02 | GSE124134 | GEO

"Cancersensor": Circadian Rhythms

Project description:Observational, non randomized study aimed at measuring the circadian rhythms in the urinary concentrations of physiological modified nucleosides in 30 patients with metastatic colorectal cancer and in 30 age and sex-matched healthy subjects.

| 2132582 | ecrin-mdr-crc

Differences in circadian rhythms in fly at different temperatures

Project description:This SuperSeries is composed of the SubSeries listed below.

2019-12-02 | GSE124136 | GEO

Dietary tryptophan and circadian rhythms

Project description:Dietary tryptophan and circadian rhythms

| PRJNA773065 | ENA

Circadian rhythms in plant roots

Project description:Circadian rhythms in plant roots

| PRJEB5695 | ENA

Achilles-mediated and sex-specific regulation of circadian mRNA rhythms in Drosophila

Project description:The circadian clock is an evolutionarily conserved mechanism that drives rhythmic expression of downstream genes. The core circadian clock drives the expression of clock-controlled genes either directly or indirectly, which in turn play critical roles in carrying out many rhythmic physiological processes. Nevertheless, the molecular mechanisms by which clock output genes orchestrate rhythmic signals from the brain to peripheral tissues are largely unknown. Here we explored the role of one rhythmic gene, Achilles, in regulating the rhythmic transcriptome in fly heads. Achilles is a clock-controlled gene in Drosophila that encodes a putative RNA-binding protein. Achilles expression is not detectable in core clock neurons using in-situ hybridization, although its expression is found in neurons throughout the fly brain. Together, these observations argue against a role for Achilles in regulating the core clock. To assess its impact on circadian mRNA rhythms, we performed RNA sequencing (RNAseq) to compare the rhythmic transcriptomes of control flies and those with diminished Achilles expression in all neurons. Consistent with previous observations, we observe dramatic upregulation of immune response genes upon knock-down of Achilles. Furthermore, a subset of circadian mRNAs lose their rhythmicity in Achilles knock-down flies, suggesting that a subset of the rhythmic transcriptome is regulated either directly or indirectly by Achilles. These Achilles-mediated rhythms include many genes involved in immune function and neuronal signaling such as Prosap, Nemy and Jhl-21. Comparison of RNAseq data from control flies reveal that only 42.7% of clock-controlled genes in the fly brain are rhythmic in both males and females. As mRNA rhythms of core clock genes are largely invariant between the sexes, this observation suggests that sex-specific mechanisms are an important, and heretofore under-appreciated, regulator of the rhythmic transcriptome.

2018-12-31 | GSE120100 | GEO

Maternal Circadian Rhythms during Pregnancy Dictate Metabolic Plasticity in Offspring

Project description:The circadian gene expression in peripheral tissue displays rhythmicity which is reprogrammed by feeding rhythms and dietary composition in mammals. In this study, circadian transcriptome was performed to investigate how maternal circadian rhythms during pregnancy influences circadian gene regulation in the mouse liver.

2025-01-15 | GSE236201 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data