Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptomyces sp. S6 strain:S6

ABSTRACT: Streptomyces sp. Genome sequencing and assembly

PROVIDER: PRJNA514949 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR10686511_1.fastq.gz	Fastqsanger.gz
	SRR10686512_1.fastq.gz	Fastqsanger.gz
	SRR10686513_1.fastq.gz	Fastqsanger.gz
	SRR10686514_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 21

Similar Datasets

Streptomyces sp. S6 strain:S6

Project description:Streptomyces sp. S6 strain:S6 Genome sequencing

| PRJNA1344488 | ENA

Streptomyces sp. M7 LC-MS - Streptomyces sp. M7 has demonstrated ability to remove lindane from culture media and soils

Project description:Streptomyces sp. M7 has demonstrated ability to remove lindane from culture media and soils. In this study, we used MS-based label-free quantitative proteomic to understand lindane degradation and its metabolic context in Streptomyces sp. M7. We identified the proteins involved in the up-stream degradation pathway. Our results demonstrated that mineralization of lindane is feasible since proteins from an unusual down-stream degradation pathway were also identified. Degradative steps were supported by an active catabolism that supplied energy and reducing equivalents in the form of NADPH. This is the first study in which degradation steps of an organochlorine compound and metabolic context are elucidate in a biotechnological genus as Streptomyces. These results serve as basement to study other degradative actinobacteria and to improve the degradation processes of Streptomyces sp. M7.

2018-08-10 | PXD010607 | Pride

Examination of polyester-polyurethane degradation by Streptomyces sp. PU10

Project description:This study aimed to investigate the variations in the protein composition of Streptomyces sp. PU10 when cultivated with either Impranil (polyestere-polyurethane) or glucose as the carbon source. We analyzed both the intracellular and extracellular protein fractions to gain insights into the intricate processes involving PU degradation, intermediate metabolic pathways in PU degradation, and the connection between primary and secondary metabolism within Streptomyces sp. PU10.

2024-03-29 | PXD047534 | Pride

Proteomics analysis of streptomyces sp. MBT76 demonstrates the production of qinichelins, new mixed catecholate-hydroxamate siderophores

Project description:Actinomycete genomes contain a plethora of orphan gene clusters encoding unknown secondary metabolites, and representing a huge unexploited pool of chemical diversity. The explosive increase in genome sequencing and the massive advance of bioinformatic tools have revolutionized the rationale for natural product discovery from actinomycetes. In this context, we applied a genome mining approach to discover a group of unique catecholate-hydroxamate siderophores termed as qinichelins from Streptomyces sp. MBT76. Quantitative proteomics statistically correlated a gene cluster of interest (qch) to its unknown chemotype (qinichelin), after which structural elucidation of isolated qinichelin was assisted by bioinformatics analysis and verified by MS2 and NMR experiments. Strikingly, intertwined functional crosstalk among four separately located gene clusters was implicated in the biosynthesis of qinichelins.

2018-10-24 | PXD006577 | Pride

Streptomyces sp. MB42 proteomics response to catechin, dopamine, phenylephrine

Project description:Streptomyces sp. MB42 produces antimicrobial compound under the pressence of specific compounds. This experiment is to see which gene cluster upregulated during the treatment of target compound.

2022-02-04 | PXD029669 | Pride

Proteomic study of Streptomyces sp. MC1 exposed to Cr(VI) and phenanthrene

Project description:The aim of this work was to understand the response of Streptomyces sp. MC1 when exposed to Cr(VI) and phenantrene.

2020-11-25 | PXD018877 | Pride

Streptomyces sp. A108 isolate:Streptomyces sp.

Project description:Streptomyces sp. A108 isolate:Streptomyces sp. Genome sequencing and assembly

| PRJNA644752 | ENA

GCMS Extract Streptomyces sp. SM1P

Project description:Title:Complete Genome Sequence, Biological Activities, and Metabolomic Profiles of Mangrove-derived Streptomyces sp. SM1P Author: Risa Nofiani, Puji Ardiningsih, Rizky, Cantika Dylani Putri, Rifa Rakayati, Rudiyansyah, Elfahmi, Syamsurizal, Agus Sukito, Ario Betha Juanssilfero, Josephine Elizabeth Siregar, Andita Fitri Mutiara Rizki, Wihda Aisarul Azmi, Alexandra J. Weisberg, Taifo Mahmud

| MSV000095970 | MassIVE

Streptomyces sp.

Project description:Streptomyces sp. Genome sequencing and assembly

| PRJNA509047 | ENA

Streptomyces sp.

Project description:Streptomyces sp. Genome sequencing and assembly

| PRJNA623852 | ENA