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Transcriptomic study of the response of the maize pathogen Cochliobolus heterostrophus to a plant phenolic, ferulic acid

ABSTRACT: Transcriptomic study of the response of the maize pathogen Cochliobolus heterostrophus to a plant phenolic, ferulic acid

PROVIDER: PRJNA515621 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8450650.fastq.gz	Fastqsanger.gz
	SRR8450660.fastq.gz	Fastqsanger.gz
	SRR8450670.fastq.gz	Fastqsanger.gz
	SRR8450651.fastq.gz	Fastqsanger.gz
	SRR8450661.fastq.gz	Fastqsanger.gz

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Transcriptomic study of the response of the maize pathogen Cochliobolus heterostrophus to a plant phenolic, ferulic acid

Project description:A comparison of the transcriptomes of wild type Cochliolobolus heterostrophus and a deletion mutant in the redox-sensing transcription factor ChAP1 was made. The aim was to study the role of ChAP1 in the response of this pathogen of maize to exposure to a plant-derived phenolic

2019-01-18 | GSE125235 | GEO

Ferulic Acid Challenge of Lactobacillus brevis

Project description:The presence of anti-microbial phenolic compounds, such as the model compound ferulic acid, in biomass hydrolysates poses significant challenges to the widespread use of biomass in conjunction with whole cell biocatalysis or fermentation. Currently, these inhibitory compounds must be removed through additional downstream processing to create feedstock suitable for most industrially important microbial strains. This study explores the high ferulic acid tolerance in Lactobacillus brevis (L. brevis), a lactic acid bacteria often found in fermentation processes, by global transcriptional response analysis. The transcriptional profile of L. brevis under ferulic acid stress reveals that the presence of ferulic acid primarily triggers the expression of membrane proteins to counteract ferulic acid induced changes in membrane fluidity and ion leakage, in the midst of a generalized stress response. Several promising routes for understanding phenolic acid tolerance have been identified based upon these findings. These insights may be used to guide further engineering of model industrial organisms to better tolerate phenolic compounds in processed biomass.

2011-12-31 | GSE22826 | GEO

Ferulic Acid Challenge of Lactobacillus brevis

2011-12-31 | E-GEOD-22826 | biostudies-arrayexpress

Effect of ferulic acid on Clostridium beijerinckii NCIMB 8052 transcriptome

Project description:The impacts of ferulic acid, a phenolic compound commonly found in lignin hydrolysates, on the growth, solvent production and transcriptional responses of C. beijerinckii NCIMB 8052 were determined. Addition of ferulic acid to growing cultures resulted in a decrease in the growth and solvent production by 30 and 25%, respectively, when compared to the control cultures. To better understand the toxicity of this compound, microarray analyses were performed using samples taken from these cultures at three different growth states. Several gene ontology terms and KEGG pathways were identified showing significant change at each status, including ABC transporters, two component system and oxidoreductase activity. Moreover, genes related with efflux systems and heat shock proteins were also strongly up- regulated. Among these, expression of the groESL operon was induced by more than 4-fold and was consequently selected for overexpression to improve C. beijerinckii tolerance to ferulic acid.

2015-03-25 | GSE67244 | GEO

Expression data from ferulic acid treated C. elegans

Project description:Gene expression in N2 worms treated with 500 μM or 0 μM ferulic acid, at days 5. Effects of ferulic acid in C. elegans gene expression is studied, as our results indicate a lifespan extension effect produced by this molecule. RNA-seq were used to detail the global programme of gene expression underlying the lifespan extension and identified distinct classes of up/down-regulated genes in animals treated with ferulic acid.

2021-05-05 | GSE171836 | GEO

Global transcriptomic analysis of the response of Corynebacterium glutamicum to ferulic acid

Project description:Corynebacterium glutamicum can survive by using ferulic acid as the sole carbon source. In this study, we assessed the response of C.glutamicum to ferulic acid stress by means of a global transcriptional response analysis. The transcriptional data showed that several genes involved in degradation of ferulic acid were affected. Moreover, several genes related to the stress response; protein protection or degradation and DNA repair; replication, transcription and translation; and the cell envelope were differentially expressed. Deletion of the katA or sigE gene in C. glutamicum resulted in a decrease in cell viability under ferulic acid stress. These insights will facilitate further engineering of model industrial strains, with enhanced tolerance to ferulic acid to enable easy production of biofuels from lignocellulose.

2017-09-01 | GSE86537 | GEO

Evolutionary adaptation of Aspergillus niger for increased ferulic acid tolerance

Project description:The aim of this study was to find candidate genes in A. niger involved in the increase tolerance against ferulic acid in A. niger Fa6

2020-02-26 | GSE135001 | GEO

Autotoxicity mechanism of Oryza Sativa: Microarray analysis of rice plants in response to allelochemical ferulic acid

2013-07-22 | GSE34899 | GEO

Autotoxicity mechanism of Oryza Sativa: Microarray analysis of rice plants in response to allelochemical ferulic acid

Project description:Autotoxicity plays an important mechanism in regulating plant productivity. Ferulic acid (FA) is phytotoxic and was identified in extracts and residues of rice plants as a candidate for rice allelochemicals. To help characterize the autotoxicity mechanism of rice, we present the first large-scale, transcriptomic analysis of rice root responses to ferulic acid. Two-condition experiment, short exposures and long exposures. Comparison of mock control and rice seedlings treated with 50 ppm ferulic acid (FA) during short (pooled from 1- and 3-h treatments), as compared to long (24 h) exposures.; Biological replicates: 3 control replicates (short and long exposures), 3 FA-treated replicates (short and long exposures).

2013-07-22 | E-GEOD-34899 | biostudies-arrayexpress

RNAseq on S.cerevisiae and Y.lipolytica grown with cinnamic acid, p-coumaric acid and ferulic acid

Project description:Study the transcriptional response of S. cerevisiae and Y. lipolytica under the exposure of 3 different compounds: p-coumaric acid, cinnamic acid and ferulic acid. These aromatic acids are present in microbial cell factories to produce natural compounds such as flavonoids. The aim of this project is to detect differentially expressed genes that help to increase the tolerance of these 3 compounds.

2023-10-05 | E-MTAB-11588 | biostudies-arrayexpress

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