Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tetrahymena borealis

ABSTRACT: A free-living freshwater ciliated protozoan

PROVIDER: PRJNA51611 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR349773.fastq.gz	Fastqsanger.gz
	SRR349774_1.fastq.gz	Fastqsanger.gz
	SRR349774_2.fastq.gz	Fastqsanger.gz
	SRR349775_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 66

Similar Datasets

Tetrahymena elliotti

Project description:A free-living freshwater ciliate

| PRJNA51763 | ENA

Tetrahymena malaccensis

Project description:A free-living freshwater ciliate

| PRJNA51613 | ENA

Tetrahymena thermophila

Project description:A ciliated unicellular freshwater eukaryote

| PRJNA12563 | ENA

Chromatin Immunoprecipitation sequencing of heterochromation associated proteins in Tetrahymena

Project description:In the ciliated protozoan Tetrahymena, de novo heterochromatin body formation is accompanied by programmed DNA elimination. We previously reported that dephosphorylation of the HP1-like protein Pdd1p is required for the formation of heterochromatin bodies during the process of programmed DNA elimination in the ciliated protozoan Tetrahymena. Here, we show that the heterochromatin body component Jub4p is required for Pdd1p phosphorylation, heterochromatin body formation and DNA elimination. Moreover, our analyses of unphosphorylatable Pdd1p mutants demonstrate that Pdd1p phosphorylation is required for heterochromatin body formation and DNA elimination, while it is dispensable for local heterochromatin assembly. Therefore, both phosphorylation and the following dephosphorylation of Pdd1p are necessary to facilitate the formation of heterochromatin bodies. We suggest that Jub4p-mediated phosphorylation of Pdd1p creates a chromatin environment that is a prerequisite for subsequent heterochromatin body assembly and DNA elimination. New macronuclei (MACs) of exconjugants were isolated from wild-type and various mutant cells at 12 hpm (hours post-mixing), sheared chromatin was immunoprecipitated andprecipitated DNA was analyzed by high-throughput sequencing

2016-07-15 | E-GEOD-83249 | biostudies-arrayexpress

Analyses of Early- and Late-scnRNAs of Tetrahymena

2016-07-15 | GSE83250 | GEO

Transcriptome analysis of the binucleate ciliate Tetrahymena thermophila with asynchronous nuclear cell cycles

Project description:As a prototypic ciliated protozoan, Tetrahymena thermophila harbors two functionally and physically distinct nuclei within a shared cytoplasm. During the vegetative phase of the life cycle, the S phases of the diploid germline micronucleus and polyploid somatic macronucleus are temporally offset. Here we report the first RNA-Seq analysis across the cell cycle of a binucleated ciliated protozoan. We then performed gene expression profiling analysis using data obtained from RNA-seq of 4 different cells at two time points.

2023-01-11 | GSE209619 | GEO

Chromatin Immunoprecipitation sequencing of heterochromation associated proteins in Tetrahymena

2016-07-15 | GSE83249 | GEO

Paramecium caudatum

Project description:A free-living ciliate protozoan

| PRJNA251910 | ENA

Paramecium biaurelia

Project description:A free-living ciliate protozoan

| PRJNA268394 | ENA

Paramecium sexaurelia

Project description:A free-living ciliate protozoan

| PRJNA268395 | ENA