Ontology highlight
ABSTRACT:
PROVIDER: PRJNA517285 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Other | ||||
| SRR8835125_1.fastq.gz | Fastqsanger.gz | |||
| SRR8835125_2.fastq.gz | Fastqsanger.gz | |||
| SRR8835126_1.fastq.gz | Fastqsanger.gz | |||
| SRR8835126_2.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 11 |
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Project description:Polyethylene terephthalate (PET) is one of the most commonly used plastics, utilized in synthetic fibers, water containers, and food packaging. From the 1990s onwards, the demand for PET, and therefore its production, increased exponentially. This increased usage of PET has resulted in a staggering accumulation of undegraded plastic waste. Nearly 80% of the 6300 million tons of plastic waste that had been generated as of 2015 were accumulated in landfills or the natural environment. Moreover, the production of PET relies heavily on non‐renewable fossil fuels, exacerbating environmental concerns over its widespread use. In alignment with principles of environmental sustainability, the biotechnological upcycling of PET has recently emerged as a compelling solution. Since the discovery of PETase, a hydrolase capable of depolymerizing this polyester, enzymatic plastic breakdown is increasingly considered as a promising solution for managing PET waste. This enzyme and its improved derivatives, such as Fast‐PETase, enable the breakdown of PET into bis(2‐41 hydroxyethyl) terephthalate (BHET) and mono(2‐hydroxyethyl) terephthalate (MHET). Subsequently, the enzyme MHETase is responsible for further degradation of MHET into ethylene glycol and terephthalic acid. The metabolic capability of microorganisms to utilize these monomers of PET for growth has been explored in various biotechnological applications, especially in the context of bioremediation and bioconversion processes aimed at transforming plastic waste into useful products using genetically engineered bacteria.
2025-05-23 | PXD060720 | Pride
Project description:Synthetic plastics, like polyethylene terephthalate (PET), have become an essential part of modern life. Many of these products are remarkably persistent in the environment, and the accumulation in the environment is recognised as a major threat. Therefore, an increasing interest has been paid to screen for organisms able to degrade and assimilate the plastic. Ideonella sakaiensis was isolated from a plastisphere, a bacterium that solely was thriving on the degradation on PET films. The processes affected by the presence of PET, terephthalic acid, ethylene glycol, ethyl glycolate, and sodium glyoxylate monohydrate was elucidated by differential proteomes. The exposure of PET and its monomers seem to affect two major pathways, the TCA cycle and the β-oxidation pathway, since multiple of the conditions resulted in an increased expression of proteins directly or indirectly involved in these pathways, underlying the importance in the degradation of PET by I. sakaiensis.
2023-04-04 | PXD037565 | Pride
Project description:Synthetic plastics, like polyethylene terephthalate (PET), have become an essential part of modern life. Many of these products are remarkably persistent in the environment, and the accumulation in the environment is recognised as a major threat. Therefore, an increasing interest has been paid to screen for organisms able to degrade and assimilate the plastic. Ideonella sakaiensis was isolated from a plastisphere, a bacterium that solely was thriving on the degradation on PET films. The processes affected by the presence of PET, terephthalic acid, ethylene glycol, ethyl glycolate, and sodium glyoxylate monohydrate was elucidated by differential proteomes. The exposure of PET and its monomers seem to affect two major pathways, the TCA cycle and the β-oxidation pathway, since multiple of the conditions resulted in an increased expression of proteins directly or indirectly involved in these pathways, underlying the importance in the degradation of PET by I. sakaiensis.
2023-04-04 | PXD035497 | Pride
Project description:Several environmental bacteria encode plastic-degrading enzymes, a potential evolutionary response to the rapid introduction of plastic across global ecosystems. Given the widespread use of plastic in healthcare, we hypothesised that clinical bacterial isolates may also degrade plastic, rendering plastic-containing medical devices susceptible to degradation and failure and potentially offering these pathogens a carbon source that could be used to persist in the hospital-built environment. Here, we mined the genomes of prevalent pathogens and identified several enzymes in different pathogens with homology to known plastic-degrading enzymes. Synthesising and expressing a potential plastic-degrading enzyme derived from a Pseudomonas aeruginosa wound isolate in a heterologous host, we were able to demonstrate potent plastic degrading activity. We subsequently found that the original P. aeruginosa clinical isolate could reduce the weight of a medically relevant plastic, polycaprolactone (PCL), by 78% in 7 days, and critically could use it as a sole carbon source to grow. We uncovered a direct link to virulence, demonstrating that encoding a plastic degrading enzyme can significantly enhance biofilm formation and pathogenicity in vivo. We also demonstrate that this augmented biofilm phenotype is conserved in another P. aeruginosa PCL-degrading clinical isolate we identified in a screening. We reveal that the mechanism underpinning this enhanced biofilm formation is the incorporation of the plastic breakdown products into the extracellular matrix, leading to enhanced biofilm levels. The level of PCL degradation we show by a clinical isolate and its ability to promote a key virulence and persistence determinant such as biofilm formation indicates that the integrity of any PCL containing medical device, such as sutures or implants, and the condition of patients receiving such devices could be severely compromised by pathogens with this capacity. Given the central role of plastic in healthcare, this should be considered in the future of medical interventions and practice and hospital designs implementing this material
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Project description:Galleria mellonella larvae efficiently biodegrade LDPE plastic via gut monooxygenase activity.
2026-02-06 | PXD074229 |
Project description:Plastic is widely used in daily life, but it also brings serious environmental pollution. Plastic products can degrade into microplastic particles after physical, chemical, and biological processes, and microplastic particles can further degrade into nanoplastic particles. Microplastics and nanoplastic particles exist in water, atmosphere, and food, and enter the human body through the digestive and respiratory tracts, causing harm to animal and human health. In this study, Caenorhabditis elegans was exposed to a culture medium containing polystyrene plastic particles at a concentration of 1000 μ g/L to detect the healthy lifespan of the nematodes, further revealing the impact of polystyrene nanoparticles on human health and providing a theoretical basis for further evaluating the biological toxicity effects and potential health risks of polystyrene nanoparticles.
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Project description:Bacterial communities from the gut of T. molitor larvae fed with LDPE and PET plastics. Targeted loci environmental
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Project description:In the present study, we screened various fungi for their ability to degrade intact polymers, such as ether-based PU and LDPE, using Impranil and a mixture of long-chain alkanes, not only as sole carbon sources but also as enzyme indicators for polymer degradation. The agar plate screening revealed 3 fungal strains belonging to Fusarium and Aspergillus genera, which were further cultured in presence of the same carbon sources, and their secretome was utilized for polymer degradation. Especially for ether-based PU, the secreted proteins of a Fusarium species reduced the weight and the molecular weight of the sample by 24.5 and 20.4%, respectively, while at the same time the secretome of an Aspergillus species caused changes in the molecular structure of LDPE. The proteomic analysis followed proved that the enzymes induced in presence of Impranil can selectively degrade the urethane bond of ether-based PU, a discovery that offers a new alternative in PU waste treatment. Meanwhile, the mechanism of LDPE degradation was not completely understood, although the presence of oxidative enzymes probably accompanied by reactive oxygen species, could be the main factors contributing to polymer functionalization.
2023-04-27 | PXD038835 | Pride