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ABSTRACT: Dual RNA-Seq data for Pseudosciaena crocea infected by fliA-RNAi strain of Pseudomonas plecoglossicida

PROVIDER: PRJNA520739 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR8523630_1.fastq.gz	Fastqsanger.gz
	SRR8523630_2.fastq.gz	Fastqsanger.gz
	SRR8523631_1.fastq.gz	Fastqsanger.gz
	SRR8523631_2.fastq.gz	Fastqsanger.gz
	SRR8523632_1.fastq.gz	Fastqsanger.gz

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Genome-wide transcriptional regulation by the flagellar sigma factor FliA in Pseudomonas putida

Project description:The sigma factor FliA (σ28) has been described to activate the expression of several chemoreceptor-encoding genes and the late flagellar genes in Pseudomonas putida, enabling synthesis of the filament, an stator complex and completion of the flagella-associated chemotaxis machinery. The activity of FliA is repressed in the cytoplasm by the anti-sigma factor FlgM upon completion of the flagellar hook. In this study we aim to identify genome-wide targets of regulation by FliA in P. putida KT2442 (a spontaneous rifampicin-resistant mutant of the reference strain KT2440) by performing RNA-seq experiments using a fliA deletion mutant and a constitutively active strain that combines the deletion of flgM with ectopic production of FliA.

2024-11-18 | GSE281820 | GEO

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