Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages.

ABSTRACT: Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages.

PROVIDER: PRJNA520892 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8527280.fastq.gz	Fastqsanger.gz
	SRR8527290.fastq.gz	Fastqsanger.gz
	SRR8527300.fastq.gz	Fastqsanger.gz
	SRR8527310.fastq.gz	Fastqsanger.gz
	SRR8527281.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 45

Similar Datasets

Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages.

Project description:RNA-seq was employed to analyze differential gene expression upon ERFE knockdown in Xenopus laevis embryos at three different developmental stages using two non-overlapping translation blocking morpholino oligonucleotides. Only a small number of genes was affected by both morpholinos and at more than one of the developmentel stages analyzed, among them gja4, the gene coding for Gap junction junction protein Alpha 4.

2020-02-04 | GSE126058 | GEO

Transcription profiling of Xenopus tropicalis tadpole tail tissue regeneration following removal

Project description:In this experiment, we show transcription profiling of the Xenopus tropicalis tadpole tail tissue regeneration following removal. The tail tissues include its spinal cord, notochord, muscle, and dorsal aorta. We characterized the early, intermediate, and late stages of Xenopus tropicalis tail regeneration using the Xenopus tropicalis Affymetrix genome array in biological replicate.

2010-10-01 | E-MEXP-2420 | biostudies-arrayexpress

Thyroid hormone induced resorption of tail in Xenopus laevis tadpole

Project description:Premetamorphic Xenopus laevis tadpole tail respond to thyroid hormone by resorption. The goal of this experiment is to identify the genes involved in the TH-induced resorption tadpole tail and compare it to TH-induced proliferation and differentiation program in tadpole limb and brain. Xenopus tadpoles (NF54) were treated with 100 nM T3 in 0.1 x MMR for another 24h and 48h or without T3 for 48h (control group). NF 61 tadpoles were in 0.1 X MMR till they reached NF stage 62. The tails were dissected after the experiment. Keywords: development or differentiation design,organism part comparison design,reference design,replicate design,time series design

2005-10-04 | GSE3405 | GEO

Thyroid hormone induced changes in Xenopus laevis tadpole brain

Project description:Premetamorphic Xenopus laevis tadpoles brain ventricle cells respond to thyroid hormone by proliferation and subsequent differentiation. The goal of this experiment is to identify the genes involved in the TH-induced proliferation pathway in tadpole brain and compare it to TH-induced proliferation and differentiation program in tadpole limb. Xenopus tadpoles (NF54) were treated with 1 mM methimazole in 0.1 X MMR solution for 1 week to block the endogenous TH production and reduce the TH present in the system of the tadpole. They were then treated with 100 nM T3 in 1 mM methimazole and 0.1 x MMR for another 24h and 48h or without T3 for 48h (control group). Brains from the tadpoles were dissected at the end of the experiment. Keywords: development or differentiation design,organism part comparison design,reference design,replicate design,time series design

2005-10-04 | GSE3402 | GEO

Thyroid hormone induced changes in Xenopus laevis tadpole limb bud

Project description:Premetamorphic Xenopus laevis tadpoles limb bud cells respond to thyroid hormone by proliferation and subsequent differentiation. The goal of this experiment is to identify the genes involved in the TH-induced proliferation pathway in developing tadpole limb bud and compare it to TH-induced proliferation and differentiation program in tadpole brain. Xenopus tadpoles (NF54) were treated with 1 mM methimazole in 0.1 X MMR solution for 1 week to block the endogenous TH production and reduce the TH present in the system of the tadpole. They were then treated with 100 nM T3 in 1 mM methimazole and 0.1 x MMR for another 24h and 48h or without T3 for 48h (control group). Limb buds were dissected at the end of the experiment. Keywords: development or differentiation design,organism part comparison design,reference design,replicate design,time series design

2005-10-04 | GSE3404 | GEO

RNA-Seq of Xenopus laevis Retina after Crispr-mediated Rhodopsin depletion

Project description:In Xenopus laevis knocking out rhodopsin genes by crispr/Cas9 is a model of Retinitis pigmentosa. In late tadpole (permissive stages), glial Muller cells proliferate to support a regeneration response in the retina. However in early tadpole (refractory stages) the proliferative response is absent and Muller cells remain quiescent. To identify features that support Muller cells proliferation upon retinal injury we devised an experiment comparing permissive and refractory stages retina in control and Rhodopsin-crispant embryos.

2025-02-02 | E-MTAB-13881 | biostudies-arrayexpress

Xenopus tadpole gut metagenome and metatranscriptome

Project description:Metagenomic and metatranscriptomic survey from Xenopus tropicalis tadpole gut at stage NF56

| PRJEB9311 | ENA

Thyroid hormone induced changes in Xenopus laevis tadpole brain

Project description:Thyroid hormone induced changes in Xenopus laevis tadpole brain

| PRJNA93535 | ENA

DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain

Project description:Changes in DNA methylation in the preoptic area/hypothalamus/thalamus of Xenopus tropicalis tadpoles were analyzed using Methylated DNA Capture sequencing (MethlCap-seq) at four stages of metamorphosis.

2019-10-23 | GSE139267 | GEO

Transcription profiling of Xenopus embryos from early blastula to early neurula stages

Project description:Gene expression was analysed in normally developing Xenopus laevis embryos from early blastula to early neurula stages

2009-03-01 | E-MEXP-2059 | biostudies-arrayexpress