Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The Koala (Phascolarctos cinereus) faecal microbiome differs with diet in a wild population.

PROVIDER: PRJNA521666 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8557280_1.fastq.gz	Fastqsanger.gz
	SRR8557280_2.fastq.gz	Fastqsanger.gz
	SRR8557290_1.fastq.gz	Fastqsanger.gz
	SRR8557290_2.fastq.gz	Fastqsanger.gz
	SRR8557300_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Koala methylomes reveal divergent and conserved DNA methylation signatures of X chromosome regulation

Project description:We examined genome-wide patterns of DNA methylation from whole genome DNA methylation maps of five tissues (brain, kidney, lung, skeletal muscle, and pancreas) from one male koala and one female koala (Phascolarctos cinereus), and present the first whole genome, multi-tissue “methylome atlas” with information on tissue- and sex-specific variation of DNA methylation for a marsupial.

2021-02-27 | GSE149600 | GEO

Phascolarctos cinereus

Project description:Immunomics of the koala (Phascolarctos cinereus)

| PRJNA275238 | ENA

Project description:Individuality and stability of the koala (Phascolarctos cinereus) faecal microbiota through time

| PRJNA823502 | ENA

Proteomic analysis of koala (Phascolarctos cinereus) spermatozoa and prostatic bodies

Project description:The aims of this study were to investigate the proteome of koala (Phascolarctos cinereus) spermatozoa and that of the prostatic bodies with which they form intimate contact at the moment of ejaculation. For this purpose, spermatozoa and prostatic bodies were obtained from four adult male koala by electroejaculation and analysed by high performance liquid chromatography coupled to a mass spectrometer. This strategy successfully identified and 744 koala sperm and 1,297 prostatic body proteins, which were subsequently attributed to 482 and 776 unique gene products, respectively. Gene ontology curation of the koala sperm proteome revealed an abundance of proteins mapping to the canonical sirtuin and 14-3-3 signalling pathways. By contrast, protein ubiquitination and unfolding protein response pathways dominated the equivalent analysis of proteins uniquely identified in koala prostatic bodies. In terms of functional annotation, koala sperm proteins commonly mapped to the categories of cellular compromise/inflammatory response, whilst those of the prostatic body revealed an over-representation of molecular chaperone and stress-related proteins associated with cell survival. Cross-species comparisons demonstrated that the koala sperm proteome displays greater conservation with that of eutherians (human; 93%) as opposed to reptile (crocodile; 39%) and avian (rooster; 27%) spermatozoa. Similarly, koala prostatic body proteins also presented a relatively high degree of overlap (70%) with those identified in sub-populations of large human seminal plasma extracellular vesicles. Together, this work contributes our overall understanding of the core sperm proteome and has identified candidate markers that may contribute to the exceptional longevity of koala spermatozoa during ex vivo storage.

2021-08-23 | PXD024250 | Pride

Phascolarctos cinereus breed:Koala

Project description:Phascolarctos cinereus breed:Koala Raw sequence reads

| PRJNA540172 | ENA

Phascolarctos cinereus

Project description:Phascolarctos cinereus sequencing for koala retrovirus identification

| PRJNA770362 | ENA

Phascolarctos cinereus strain:Koala retrovirus

Project description:Phascolarctos cinereus strain:Koala retrovirus Raw sequence reads

| PRJNA390486 | ENA

Project description:Landscape characterisation of the koala (Phascolarctos cinereus) gut microbiota

| PRJNA702467 | ENA

Phascolarctos cinereus

Project description:Phascolarctos cinereus overview

| PRJNA231009 | ENA

16S rRNA analysis from wild type mice that were either fed or not with western diet for 3 generations

Project description:We found that western diet consumption resulted in decrease in the percentage of normal Paneth cell population in wild type mice, indicating that western diet could negatively affect Paneth cell function. Subsequent generations of western diet consumption further reduced percentages of normal Paneth cell population. We performed fecal microbiota composition profiling. Male mice were used at 4-5 weeks of age. Fecal samples were collected for microbiome analysis.

2023-01-01 | E-MTAB-10995 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data