Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Namibian shelf sediment metatranscriptomes

ABSTRACT: Bengeulla upwelling system (Namibia) metaomics datasets

PROVIDER: PRJNA525353 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10267045_1.fastq.gz	Fastqsanger.gz
	SRR10267045_2.fastq.gz	Fastqsanger.gz
	SRR10267046_1.fastq.gz	Fastqsanger.gz
	SRR10267046_2.fastq.gz	Fastqsanger.gz
	SRR10267047_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 153

Similar Datasets

Amplicons, Metagenomes, and Metatranscriptomes from Sediment and Water.

Project description:High fecal indicator bacterium (FIB) counts in water have been found to correlate with high sediment FIB counts. To determine the other bacterial populations in common between the two substrates, sediment and water samples from suburban waters known to be impacted by stormwater runoff were examined using next-generation sequencing.

| S-EPMC10112233 | biostudies-literature

Metagenomes, Metagenome-Assembled Genomes, and Metatranscriptomes from Polychlorinated Biphenyl-Contaminated Sediment Microcosms.

Project description:We present a comprehensive data set that describes an anaerobic microbial consortium native to polychlorinated biphenyl (PCB)-contaminated sediments. Obtained from sediment microcosms incubated for 200 days, the data set includes 4 metagenomes, 4 metatranscriptomes (in duplicate), and 62 metagenome-assembled genomes and captures microbial community interactions, structure, and function relevant to anaerobic PCB biodegradation.

| S-EPMC9302077 | biostudies-literature

Early Cambrian origin of the shelf sediment mixed layer.

Project description:The mixed layer of modern oceans is a zone of fully homogenized sediment resulting from bioturbation. The mixed layer is host to complex biogeochemical cycles that directly impact ecosystem functioning, affecting ocean productivity and marine biodiversity. The timing of origin of the mixed layer has been controversial, with estimates ranging from Cambrian to Silurian, hindering our understanding of biogeochemical cycling and ecosystem dynamics in deep time. Here we report evidence from the Global Stratotype Section and Point (GSSP) of the basal Cambrian in the Burin Peninsula of Newfoundland, Canada, showing that a well-developed mixed layer of similar structure to that of modern marine sediments was established in shallow marine settings by the early Cambrian (approximately 529 million years ago). These findings imply that the benthos significantly contributed to establishing new biogeochemical cycles during the Cambrian explosion.

| S-EPMC5953921 | biostudies-literature

sediment metagenome

Project description:Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162YC_Rep3_CE metagenome

| PRJNA566629 | ENA

sediment metagenome

Project description:Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Thioflexothrix JNN161YC_Rep2_CE metagenome

| PRJNA566634 | ENA

sediment metagenome

Project description:Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162YC_Rep4_CE metagenome

| PRJNA566630 | ENA

sediment metagenome

Project description:Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Thioflexothrix JNN161YC_Rep4_CE metagenome

| PRJNA566635 | ENA

sediment metagenome

Project description:Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162YC_Rep1_CE metagenome

| PRJNA566628 | ENA

sediment metagenome

Project description:Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162BE_Rep2_CE metagenome

| PRJNA566631 | ENA

sediment metagenome

Project description:Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162BE_Rep3_CE metagenome

| PRJNA566632 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data