Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus strain:ICR

ABSTRACT: PAIso-seq of mouse GV oocytes

PROVIDER: PRJNA529588 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8798075_subreads.fastq.gz	Fastqsanger.gz
	SRR9130400_subreads.fastq.gz	Fastqsanger.gz
	SRR9130410_subreads.fastq.gz	Fastqsanger.gz
	SRR9130401_subreads.fastq.gz	Fastqsanger.gz
	SRR9130411_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 17

Similar Datasets

Mus musculus strain:Slc:ICR

Project description:mouse oocytes matured with 0.2% ethanol

| PRJDB16176 | ENA

Reducedfemalefertility duetosequestration ofRNA Pol II by pervasive transcription in exosome RNasedepleted oocytes

Project description:We performed mouse single oocyte RNA-seq and bulk oocyte CUT&Tag assays in the current project. In details, SMART-seq based single oocyte RNA-seq was performed at adult GV stage, GV3h stage and MII stage, using control and Dis3 oocyte-speicfic knockout (cKO) oocytes. RiboMinus-seq based single oocyte RNA-seq was performed at adult GV stage using control and Dis3 cKO oocytes, and at p20 GV stage using control, Dis3 cKO, Exosc10 cKO and Dis3/Exosc10 double cKO (dcKO) oocytes. Bulk CUT&Tag of anti-H3K27me3 was done in WT and Dis3 cKO oocytes at adult GV stage, and in WT and Dis3/Exosc10 dcKO oocytes at p20 stage. In addition, CUT&Tag of anti-RNA polymerase II (Ser2+Ser5) was performed in WT and Dis3 cKO oocytes at GV stage. All CUT&Tag experiments share the same rabbit-Igg negative control. All p20 stage oocytes were specified as p20. The non-specified GV oocytes were all adult GV oocytes.

2022-02-11 | GSE196331 | GEO

Mus musculus

Project description:Expression analysis in Patl2-knock-out mouse oocytes (GV and MII stages)

| PRJNA390755 | ENA

Mus musculus strain:ICR

Project description:RNA-seq of H2BmCh iOE mouse hearts

| PRJDB16575 | ENA

Mus musculus

Project description:Single-cell RNA sequencing of Zfp36l2 knock-out and floxed GV mouse oocytes.

| PRJNA379289 | ENA

Mus musculus strain:ICR

Project description:ATAC seq of cardiomyocyte nuclei of H2BmCh iOE mouse

| PRJDB16583 | ENA

Whole transcriptome bisufilte sequencing for multiple species [Mouse]

Project description:We applied BS-seq to mouse GV and MII oocytes, and 1-Cell embryos.

2022-02-27 | GSE160595 | GEO

Mus musculus strain:ICR

Project description:Hi-C seq of cardiomyocyte nuclei of H2BmCh iOE mouse

| PRJDB16582 | ENA

Project description:ATAC of mouse GV oocytes

| PRJNA819560 | ENA

Bidirectional Introgression between Mus musculus domesticus and Mus spretus.

Project description:Introgressed variants from other species can be an important source of genetic variation because they may arise rapidly, can include multiple mutations on a single haplotype, and have often been pretested by selection in the species of origin. Although introgressed alleles are generally deleterious, several studies have reported introgression as the source of adaptive alleles-including the rodenticide-resistant variant of Vkorc1 that introgressed from Mus spretus into European populations of Mus musculus domesticus. Here, we conducted bidirectional genome scans to characterize introgressed regions into one wild population of M. spretus from Spain and three wild populations of M. m. domesticus from France, Germany, and Iran. Despite the fact that these species show considerable intrinsic postzygotic reproductive isolation, introgression was observed in all individuals, including in the M. musculus reference genome (GRCm38). Mus spretus individuals had a greater proportion of introgression compared with M. m. domesticus, and within M. m. domesticus, the proportion of introgression decreased with geographic distance from the area of sympatry. Introgression was observed on all autosomes for both species, but not on the X-chromosome in M. m. domesticus, consistent with known X-linked hybrid sterility and inviability genes that have been mapped to the M. spretus X-chromosome. Tract lengths were generally short with a few outliers of up to 2.7 Mb. Interestingly, the longest introgressed tracts were in olfactory receptor regions, and introgressed tracts were significantly enriched for olfactory receptor genes in both species, suggesting that introgression may be a source of functional novelty even between species with high barriers to gene flow.

| S-EPMC8784167 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data