Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fragaria iinumae isolate:FII-19-9

ABSTRACT: Fragaria iinumae isolate:FII-19-9 Genome sequencing and assembly

PROVIDER: PRJNA544784 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR9217950_subreads.fastq.gz	Fastqsanger.gz
	SRR9217951_1.fastq.gz	Fastqsanger.gz
	SRR9217951_2.fastq.gz	Fastqsanger.gz
	SRR9217949_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Fragaria iinumae

Project description:Fragaria iinumae Genome sequencing and assembly

| PRJNA392946 | ENA

Fragaria iinumae

Project description:Fragaria iinumae: FII_r1.1 (Strawberry whole-genome sequencing)

| PRJDB1478 | ENA

Fragaria iinumae

Project description:diploid Fragaria species

| PRJNA243257 | ENA

Fragaria iinumae

Project description:Fragaria iinumae Raw sequence reads

| PRJNA301619 | ENA

A near-complete genome assembly of Fragaria iinumae.

Project description:Fragaria iinumae, a diploid progenitor species of octoploid strawberries, likely occupies a basal position within the genus Fragaria. In this study, we report a near-complete genome assembly of F. iinumae v2.0, totaling 241.14 Mb with a contig N50 of 33.31 Mb. We identified 14 telomeric and 7 centromeric regions across its seven chromosomes. Compared to previous assemblies, F. iinumae v2.0 demonstrates substantial improvements in both genome continuity (gaps reduced from 29 to 0) and annotation completeness, including the annotation of 4,144 new genes and 395 new gene clusters. Notably, several large structural variants were identified between the F. iinumae v1.0 and F. iinumae v2.0 genomes, with most gaps in the v1.0 assembly overlapping with structural variant breakpoints. Additionally, we found a significant expansion of telomeric repeats in the B subgenome of octoploid strawberries compared to F. iinumae. Interestingly, two telomeres consistently exhibited low repeat abundance in both the diploid and octoploid B subgenomes, suggesting significant contraction early in the evolution of F. iinumae. Furthermore, through multiple lines of genomic evidence-including phylogenetic analyses, genetic distance matrices, a burst of LTR insertions, and the distribution of NLR resistance genes, we conclude that F. iinumae may represent an early-diverging lineage within the strawberry genus. This updated assembly provides a crucial genomic resource for understanding of the origin and structural dynamics of the strawberry genus and facilitates further exploration of genome-wide consequences of polyploidy.

| S-EPMC11909947 | biostudies-literature

Fragaria

Project description:Fragaria Genome sequencing and assembly

| PRJNA1050417 | ENA

Proteus mirabilis strain:19 | isolate:19

Project description:Proteus mirabilis strain:19 | isolate:19 Genome sequencing

| PRJNA1156943 | ENA

Torrubiellomyces zombiae isolate:Field(B)_6/19/19

Project description:Torrubiellomyces zombiae isolate:Field(B)_6/19/19 Genome sequencing and assembly

| PRJNA670675 | ENA

Shewanella sp. 867-19 isolate:867-19

Project description:Shewanella sp. 867-19 isolate:867-19 Genome sequencing