Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Populus tremula alba 717-1B4 seedlings

ABSTRACT: Populus tremula alba 717-1B4 seedlings ITS Raw sequence reads

PROVIDER: PRJNA548250 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR9297430_1.fastq.gz	Fastqsanger.gz
	SRR9297430_2.fastq.gz	Fastqsanger.gz
	SRR9297440_1.fastq.gz	Fastqsanger.gz
	SRR9297440_2.fastq.gz	Fastqsanger.gz
	SRR9297450_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 88

Similar Datasets

Populus tremula x alba 717-1B4 Laccaria bicolor S238N ectomycorrhiza

Project description:Illumina technology was used to generate mRNA profiles of Populus tremula x alba 717-1B4 control roots and Laccaria bicolor S238N ectomycorrhiza. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the Populus trichocarpa v4.1 primary transcripts available at Phytozome (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v4_1l) using CLC Genomics Workbench v24.

2025-07-15 | GSE287497 | GEO

Time Course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development

Project description:Illumina technology was used to generate mRNA profiles of a time course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced in triplicates (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the L. bicolor v2 reference transcripts available at the JGI database https://mycocosm.jgi.doe.gov/Lacbi2/Lacbi2.home.html using CLC Genomics Workbench v8.

2021-12-15 | GSE190443 | GEO

Populus tremula alba 717-1B4 seedlings

Project description:Populus tremula alba 717-1B4 seedlings 16S Raw sequence reads

| PRJNA548249 | ENA

Populus tremula alba 717-1B4 cuttings

Project description:Populus tremula alba 717-1B4 cuttings Raw sequence reads

| PRJNA657694 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba 717-1B4 transcriptome - AaRVE29

| PRJNA535624 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba 717-1B4 transcriptome - AaRVE02